XLOC_009304 (dharma)


Basic Information

Item Value
gene id XLOC_009304
gene name dharma
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29011290 ~ 29012493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018289
TTTAGAGACAGAGCAAGAGGAGAGAGTACTACATACTCACGCAGCTTTTGGGCACCCCTACACTTGAACATGGCAACTCAGAAGTTTTCAAACTTCTCCATTGATTACATCTTAGGAGACACCAGCAGGCAAACAGCAGAATCCCCTGGAGTGGATCATCCAGCATCTTCTCAAGATTTCCAGGGGCACTTGAGAAAGCTGGACCAGCTCTACCAAGAAGGATGTAGAGGTCACTGTGATCGTGCAGCACTGATGGTGAACTTTCCTTGTCCATCATGGCCAGGGATGTACTGCTGCTGCGTTCCAGTCTCCTACTACCAGTCGACTTACTATGCAGGGCAACCGTGGCCTTATGCCGTAGCCGGTTGTGAAACAGCTGAGAATCACTACCACACAATCGCTCAGCGACCGCGCGGTCGAATCCGAACGGTTTTTACCGACAACCAGACGGAGCAGCTCGAGCGACTCTTCGCGGTTACCGACTACCCGACCGTCGAGACCCGGGCAGAGTTAGCCCAAAACACGGGCCTCAGCGAGGAGACTGTGCGGGTGTGGTTCAAGAATCGACGTGCACGCAGAAAGAGACAGACAACCTGCCCTGACAAACACGCTAATCGAGCTCTGGAGGATCATCAGGAATCAGATTAGCCTAATTTATGACAGAATAATGCCAACATTTTGTtggaatgtctttttaaaaatatacacatttgTTCTACAGTTTAACTTATGTACATTTTATATGAATAAACATGATTTTCTCAAATTAA

Function

symbol description
dharma Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ morphogenesis; floor plate development; and regulation of signal transduction. Predicted to be located in nucleus. Is expressed in embryonic structure.

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0048854 brain morphogenesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0048319 axial mesoderm morphogenesis biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0014028 notochord formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0061053 somite development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0030903 notochord development biological_process
GO:0001947 heart looping biological_process
GO:0060061 Spemann organizer formation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-22 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ morphogenesis; floor plate development; and regulation of signal transduction. Predicted to be located in nucleus. Is expressed in embryonic structure.

Ensembl:

ensembl_id ENSDARG00000040955

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018289 True 770 mRNA 0.48 3 29011290 29012493

Neighbor

gene id symbol gene type direction distance location
XLOC_009303 NA coding downstream 2231 29005044 ~ 29009059 (-)
XLOC_009302 eml2 coding downstream 103263 28874441 ~ 28908027 (-)
XLOC_009301 gpr4 coding downstream 151008 28822736 ~ 28860282 (-)
XLOC_009298 blmh coding downstream 205797 28634580 ~ 28805493 (-)
XLOC_009305 zgc:162698 coding upstream 80034 29092527 ~ 29114467 (-)
XLOC_009306 xaf1 coding upstream 142054 29154547 ~ 29162261 (-)
XLOC_009307 si:dkey-52l18.4 coding upstream 309710 29322203 ~ 29326254 (-)
XLOC_009308 tsku coding upstream 330787 29343280 ~ 29354020 (-)
XLOC_009309 serpinh1b coding upstream 369961 29382454 ~ 29388012 (-)
XLOC_009300 NA non-coding downstream 238716 28758455 ~ 28772574 (-)
XLOC_009299 BX950186.1 non-coding downstream 276249 28734927 ~ 28735041 (-)
XLOC_009296 NA non-coding downstream 414781 28594543 ~ 28596509 (-)
XLOC_009294 NA non-coding downstream 469524 28500046 ~ 28541766 (-)
XLOC_009312 NA non-coding upstream 523991 29536484 ~ 29539166 (-)
XLOC_009316 CR388369.1 non-coding upstream 637022 29649515 ~ 29665812 (-)
XLOC_009317 CR388369.1 non-coding upstream 639529 29652022 ~ 29667209 (-)
XLOC_009318 CR388369.2 non-coding upstream 657699 29670192 ~ 29670306 (-)
XLOC_009319 NA non-coding upstream 696806 29709299 ~ 29714528 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_05298324_05299101 DHARMA coding CI01000072 null 5298211 ~ 5299126 (-)