XLOC_009305 (zgc:162698)


Basic Information

Item Value
gene id XLOC_009305
gene name zgc:162698
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29092527 ~ 29114467 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018291
AAAGTGACGTCGAACAGGATGTGGATTTGCACAGGGAAGTGAGTAATGTGTCTCGCGCAGAAGTTGTAACGTCGTCTACTGGTTCCTCTTAATAATGGCGACTGTCACGACCGAGTCAATGGTGTCGGCAGGACTTACAAGAGTATTTCCGATAGTCATTGTTCTTTTTGTATTAATACCGCCGCTAACAGCGATGTCAGAGCAGGGCAAATGGACCCTGAACGTGAATAATGAAGATATTGGGAAGTCAAAATACTTCTATTATCCGAAGACAATGTTCAATGATACTTACATTACAATAACCTGGCTCAGTGAAGAATGCGGGGGTCCTGTAAAAATCAGTATAGGATGGTATTTGCGAAGTTCTCCTTGCCACAATGAAATTTTTGGATTTAAAtcaGAAAATGCAGAACATTATTTTAGCTCCAGCAATGTACAGTGGGAAGGAGGCACGGGATTCTACATAAGTCACTTGTATGAGCCTATAACTTGTGAATCGAATATTCAGAAAAATAAGCTTGGATTGAAGGTATTTGATCACCCTAAAAAGCTGCAGCCATTACATCCAGTAACCACAGCTGACACAAAAGAAAGACCAAAGAGGGATGCAGAGGACAAAGGACAGACAAAAGAGGCTGCTGCACCAAATTCATCCAATGCCCCCAAAAGCAAAGACACATCAGTGGAAAATTCGTCTAAACCACCTGATGCAGTTGCACGAACCTGGGAAGACAGCCCTTACATGTTCATTATTAAAATTGATGCCGATTCACCTGCAAAAGACACCAAATGGAGCATACAACTGGAGATCAAGATGAAAAGCCGCCATGAATACATATCTGCTTCTGAATGGCCGTTGATGATTTTTTACATGGTGATGTGCATCATCTATGTGATCATGGCAGTGCTGTGGTTGGTTCTCTCGGCTTGTTACTGGAGAGATCTGCTGCGAATTCAGTTCTGGATTGGAGGAGTGATCTTTCTGGGCATGCTTGAGAAAGCGGTCTTCTATGCAGAGTTCCAGAGTATTCGTTATGATGGCCAGTCGGTTCAAGGTGCAATAATGTTTGCAGAGGTGCTTTCGGCTGTGAAAAGAACGCTGGCTCGAGTGCTGGTCATCATTGCTAGCCTTGGATATGGAATAGTCAAGCCGAGACTTGGAGCATTGTTGCACAGAGTGGTCGCTGTAGGATTGCTTTTCCTTATCTTCTCCATCATAGAGGGTGTCCTGAGAGTCAACACGGAGCATGGTGGGCAAACCAGAATGATTTGTGACATAGTAATGGCCCTCATTGATTCATGTATTGTGTGTCACATCTTCATCAGCCTGGCTCAGACCATGAAGCTCCTTCGGCTGAGGAGAAACGTGGTCAAGCTCTCTATGTACAGACACTTCACCAACACACTCATATTCGCTGTTATAGCTTCTGTTATATTTATCGTCTGGACAGCAAAGACCTTCCACCTAGCCGATTGCAAATCTGACTGGAGAGAGCTGTGGATTGACGATGCCTTCTGGCGCTTCCTGTTCTCCAGTATCCTGCTTGTCATTATGTTCTTATGGAGGCCATCAGCAAACAACCAGAGGTACGCCTTCAGTCCACTGGTGGATGAGATTAGTGAGGAAGAGGAAGAGCAGCTGATGAATGAAGCCTTCGAGGGTGTGAAAATGAGGGGAATGAAACCAGAGACCAATGGAAGTGCAAAACCCAGCAAAGTGgATGAAGATCTCAAGTGGGTTGAGGAAAACATTCCCTCATCAATGGCTGACGTCGCACTGCCGCCACTGCTAGACTCAGACGAGGAGATCATGACCACGAAATTCGAGATGTCCAAAATGGAGTAGATTGATGAAGATGAAGTATGTATTGTATATAATATGTGTACGACAATGCACAACTGCTTTATCCCCAAAACACGAGCTTATCATAAGCGACGTCTGTATATACGTGGGATGATGAGGGTAATGCACTAAaggacttttgttttgtttttttaattgcctgtttgtatatattttttctcagaTAATATGGTGTCAGAGTTTcttaaaaaattactgtaaattgccTTTGACTGTTGTTTACATATCTGCAGTGCAAAATGTGATTAAAACACATTAGTTTGTGCATTGTGCTCTTTCCCTAAGAGGCTTTCGCGCAACAATCCGCTTATTAATCACATAAAGATGGGAAAACATGTAGGATAAAAGCTGTTttctgccttttattttattcgtCAGTGTGCTTTTCACAGATTAGGAGTTACATCTCTGACCTGTTGGTATTTTCAGCAAAAGTGGCCATTAAGTGTCATCTTTCTGCCCTGTAGACCATTATGCAGATTGCCTTTCAGTGGATTTATTTGACGTGAGTTTTTAGTGCTCTCTGTCATAGTTACTAGACACTCGGCTGCATTTGGGTCCAGTTACATGACATGGGGAAATGAGTTTGTCTATCAACATTACCTTAAACAAAAGGCAGAGGTTGTTTTCCACTCCAAACTTTTATTTAAGTCTTTTACAATGAGTTAGCCATAGTATGCGCAATTGTAAGTAttttatagcaaataaaaaaattaccattGAA
>TCONS_00018290
AAAGTGACGTCGAACAGGATGTGGATTTGCACAGGGAAGTGAGTAATGTGTCTCGCGCAGAAGTTGTAACGTCGTCTACTGGTTCCTCTTAATAATGGCGACTGTCACGACCGAGTCAATGGTGTCGGCAGGACTTACAAGAGTATTTCCGATAGTCATTGTTCTTTTTGTATTAATACCGCCGCTAACAGCGATGTCAGAGCAGGGCAAATGGACCCTGAACGTGAATAATGAAGATATTGGGAAGTCAAAATACTTCTATTATCCGAAGACAATGTTCAATGATACTTACATTACAATAACCTGGCTCAGTGAAGAATGCGGGGGTCCTGTAAAAATCAGTATAGGATGGTATTTGCGAAGTTCTCCTTGCCACAATGAAATTTTTGGATTTAAAtcaGAAAATGCAGAACATTATTTTAGCTCCAGCAATGTACAGTGGGAAGGAGGCACGGGATTCTACATAAGTCACTTGTATGAGCCTATAACTTGTGAATCGAATATTCAGAAAAATAAGCTTGGATTGAAGGTATTTGATCACCCTAAAAAGCTGCAGCCATTACATCCAGTAACCACAGCTGACACAAAAGAAAGACCAAAGAGGGATGCAGAGGACAAAGGACAGACAAAAGAGGCTGCTGCACCAAATTCATCCAATGCCCCCAAAAGCAAAGACACATCAGTGGAAAATTCGTCTAAACCACCTGATGCAGTTGCACGAACCTGGGAAGACAGCCCTTACATGTTCATTATTAAAATTGATGCCGATTCACCTGCAAAAGACACCAAATGGAGCATACAACTGGAGATCAAGATGAAAAGCCGCCATGAATACATATCTGCTTCTGAATGGCCGTTGATGATTTTTTACATGGTGATGTGCATCATCTATGTGATCATGGCAGTGCTGTGGTTGGTTCTCTCGGCTTGTTACTGGAGAGATCTGCTGCGAATTCAGTTCTGGATTGGAGGAGTGATCTTTCTGGGCATGCTTGAGAAAGCGGTCTTCTATGCAGAGTTCCAGAGTATTCGTTATGATGGCCAGTCGGTTCAAGGTGCAATAATGTTTGCAGAGGTGCTTTCGGCTGTGAAAAGAACGCTGGCTCGAGTGCTGGTCATCATTGCTAGCCTTGGATATGGAATAGTCAAGCCGAGACTTGGAGCATTGTTGCACAGAGTGGTCGCTGTAGGATTGCTTTTCCTTATCTTCTCCATCATAGAGGGTGTCCTGAGAGTCAACACGGAGCATGGTGGGCAAACCAGAATGATTTGTGACATAGTAATGGCCCTCATTGATTCATGTATTGTGTGGTGGATCTTCATCAGCCTGGCTCAGACCATGAAGCTCCTTCGGCTGAGGAGAAACGTGGTCAAGCTCTCTATGTACAGACACTTCACCAACACACTCATATTCGCTGTTATAGCTTCTGTTATATTTATCGTCTGGACAGCAAAGACCTTCCACCTAGCCGATTGCAAATCTGACTGGAGAGAGCTGTGGATTGACGATGCCTTCTGGCGCTTCCTGTTCTCCAGTATCCTGCTTGTCATTATGTTCTTATGGAGGCCATCAGCAAACAACCAGAGGTACGCCTTCAGTCCACTGGTGGATGAGATTAGTGAGGAAGAGGAAGAGCAGCTGATGAATGAAGCCTTCGAGGGTGTGAAAATGAGGGGAATGAAACCAGAGACCAATGGAAGTGCAAAACCCAGCAAAGTGgATGAAGATCTCAAGTGGGTTGAGGAAAACATTCCCTCATCAATGGCTGACGTCGCACTGCCGCCACTGCTAGACTCAGACGAGGAGATCATGACCACGAAATTCGAGATGTCCAAAATGGAGTAGATTGATGAAGATGAAGTATGTATTGTATATAATATGTGTACGACAATGCACAACTGCTTTATCCCCAAAACACGAGCTTATCATAAGCGACGTCTGTATATACGTGGGATGATGAGGGTAATGCACTAAaggacttttgttttgtttttttaattgcctgtttgtatatattttttctcagaTAATATGGTGTCAGAGTTTcttaaaaaattactgtaaattgccTTTGACTGTTGTTTACATATCTGCAGTGCAAAATGTGATTAAAACACATTAGTTTGTGCATTGTGCTCTTTCCCTAAGAGGCTTTCGCGCAACAATCCGCTTATTAATCACATAAAGATGGGAAAACATGTAGGATAAAAGCTGTTttctgccttttattttattcgtCAGTGTGCTTTTCACAGATTAGGAGTTACATCTCTGACCTGTTGGTATTTTCAGCAAAAGTGGCCATTAAGTGTCATCTTTCTGCCCTGTAGACCATTATGCAGATTGCCTTTCAGTGGATTTATTTGACGTGAGTTTTTAGTGCTCTCTGTCATAGTTACTAGACACTCGGCTGCATTTGGGTCCAGTTACATGACATGGGGAAATGAGTTTGTCTATCAACATTACCTTAAACAAAAGGCAGAGGTTGTTTTCCACTCCAAACTTTTATTTAAGTCTTTTACAATGAGTTAGCCATAGTATGCGCAATTGTAAGTAttttatagcaaataaaaaaattaccattGAA
>TCONS_00018292
CTTCTGAATGGCCGTTGATGATTTTTTACATGGTGATGTGCATCATCTATGTGATCATGGCAGTGCTGTGGTTGGTTCTCTCGGCTTGTTACTGGAGAGATCTGCTGCGAATTCAGTTCTGGATTGGAGGAGTGATCTTTCTGGGCATGCTTGAGAAAGCGGTCTTCTATGCAGAGTTCCAGAGTATTCGTTATGATGGCCAGTCGGTTCAAGGTGCAATAATGTTTGCAGAGGTGCTTTCGGCTGTGAAAAGAACGCTGGCTCGAGTGCTGGTCATCATTGCTAGCCTTGGATATGGAATAGTCAAGCCGAGACTTGGAGCATTGTTGCACAGAGTGGTCGCTGTAGGATTGCTTTTCCTTATCTTCTCCATCATAGAGGGTGTCCTGAGAGTCAACACGGCTGAAGATGACCTGGTGCTGCTGGCTGCCATTCCCTTGGCTGTTCTGGACTCTACCCTCTGCTGTCACATCTTCATCAGCCTGGCTCAGACCATGAAGCTCCTTCGGCTGAGGAGAAACGTGGTCAAGCTCTCTATGTACAGACACTTCACCAACACACTCATATTCGCTGTTATAGCTTCTGTTATATTTATCGTCTGGACAGCAAAGACCTTCCACCTAGCCGATTGCAAATCTGACTGGAGAGAGCTGTGGATTGACGATGCCTTCTGGCGCTTCCTGTTCTCCAGTATCCTGCTTGTCATTATGTTCTTATGGAGGCCATCAGCAAACAACCAGAGGTACGCCTTCAGTCCACTGGTGGATGAGATTAGTGAGGAAGAGGAAGAGCAGCTGATGAATGAAGCCTTCGAGGGTGTGAAAATGAGGGGAATGAAACCAGAGACCAATGGAAGTGCAAAACCCAGCAAAGTGgATGAAGATCTCAAGTGGGTTGAGGAAAACATTCCCTCATCAATGGCTGACGTCGCACTGCCGCCACTGCTAGACTCAGACGAGGAGATCATGACCACGAAATTCGAGATGTCCAAAATGGAGTAGATTGATGAAGATGAAGTATGTATTGTATATAATATGTGTACGACAATGCACAACTGCTTTATCCCCAAAACACGAGCTTATCATAAGCGACGTCTGTATATACGTGGGATGATGAGGGTAATGCACTAAaggacttttgttttgtttttttaattgcctgtttgtatatattttttctcagaTAATATGGTGTCAGAGTTTcttaaaaaattactgtaaattgccTTTGACTGTTGTTTACATATCTGCAGTGCAAAATGTGATTAAAACACATTAGTTTGTGC
>TCONS_00018293
AATACGTCCCCGCCCCCCAAAGTGACGTCGAACAGGATGTGGATTTGCACAGGGAAGTGAGTAATGTGTCTCGCGCAGAAGTTGTAACGTCGTCTACTGGTTCCTCTTAATAATGGCGACTGTCACGACCGAGTCAATGGTGTCGGCAGGACTTACAAGAGTATTTCCGATAGTCATTGTTCTTTTTGTATTAATACCGCCGCTAACAGCGATGTCAGAGCAGGGCAAATGGACCCTGAACGTGAATAATGAAGATATTGGGAAGTCAAAATACTTCTATTATCCGAAGACAATGTTCAATGATACTTACATTACAATAACCTGGCTCAGTGAAGAATGCGGGGGTCCTGTAAAAATCAGTATAGGATGGTATTTGCGAAGTTCTCCTTGCCACAATGAAATTTTTGGATTTAAAtcaGAAAATGCAGAACATTATTTTAGCTCCAGCAATGTACAGTGGGAAGGAGGCACGGGATTCTACATAAGTCACTTGTATGAGCCTATAACTTGTGAATCGAATATTCAGAAAAATAAGCTTGGATTGAAGGTATTTGATCACCCTAAAAAGCTGCAGCCATTACATCCAGTAACCACAGCTGACACAAAAGAAAGACCAAAGAGGGATGCAGAGGACAAAGGACAGACAAAAGAGGCTGCTGCACCAAATTCATCCAATGCCCCCAAAAGCAAAGACACATCAGTGGAAAATTCGTCTAAACCACCTGATGCAGTTGCACGAACCTGGGAAGACAGCCCTTACATGTTCATTATTAAAATTGATGCCGATTCACCTGCAAAAGACACCAAATGGAGCATACAACTGGAGATCAAGATGAAAAGCCGCCATGAATACATATCTGCTTCTGAATGGCCGTTGATGATTTTTTACATGGTGATGTGCATCATCTATGTGATCATGGCAGTGCTGTGGTTGGTTCTCTCGGCTTGTTACTGGAGAGATCTGCTGCGAATTCAGTTCTGGATTGGAGGAGTGATCTTTCTGGGCATGCTTGAGAAAGCGGTCTTCTATGCAGAGTTCCAGAGTATTCGTTATGATGGCCAGTCGGTTCAAGGTGCAATAATGTTTGCAGAGGTGCTTTCGGCTGTGAAAAGAACGCTGGCTCGAGTGCTGGTCATCATTGCTAGCCTTGGATATGGAATAGTCAAGCCGAGACTTGGAGCATTGTTGCACAGAGTGGTCGCTGTAGGATTGCTTTTCCTTATCTTCTCCATCATAGAGGGTGTCCTGAGAGTCAACACGGCTGAAGATGACCTGGTGCTGCTGGCTGCCATTCCCTTGGCTGTTCTGGACTCTACCCTCTGCTGGTGGATCTTCATCAGCCTGGCTCAGACCATGAAGCTCCTTCGGCTGAGGAGAAACGTGGTCAAGCTCTCTATGTACAGACACTTCACCAACACACTCATATTCGCTGTTATAGCTTCTGTTATATTTATCGTCTGGACAGCAAAGACCTTCCACCTAGCCGATTGCAAATCTGACTGGAGAGAGCTGTGGATTGACGATGCCTTCTGGCGCTTCCTGTTCTCCAGTATCCTGCTTGTCATTATGTTCTTATGGAGGCCATCAGCAAACAACCAGAGGTACGCCTTCAGTCCACTGGTGGATGAGATTAGTGAGGAAGAGGAAGAGCAGCTGATGAATGAAGCCTTCGAGGGTGTGAAAATGAGGGGAATGAAACCAGAGACCAATGGAAGTGCAAAACCCAGCAAAGTGgATGAAGATCTCAAGTGGGTTGAGGAAAACATTCCCTCATCAATGGCTGACGTCGCACTGCCGCCACTGCTAGACTCAGACGAGGAGATCATGACCACGAAATTCGAGATGTCCAAAATGGAGTAGATTGATGAAGATGAA

Function

symbol description
zgc:162698 Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and membrane. Orthologous to human TMEM87A (transmembrane protein 87A) and TMEM87B (transmembrane protein 87B).

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0006810 transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-185 Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and membrane. Orthologous to human TMEM87A (transmembrane protein 87A) and TMEM87B (transmembrane protein 87B).

Ensembl:

ensembl_id ENSDARG00000074967

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018291 False 2588 mRNA 0.42 21 29092527 29114449
TCONS_00018290 False 2588 mRNA 0.42 21 29092527 29114449
TCONS_00018292 False 1285 mRNA 0.45 13 29092985 29109620
TCONS_00018293 True 1876 mRNA 0.46 21 29093254 29114467

Neighbor

gene id symbol gene type direction distance location
XLOC_009304 dharma coding downstream 80034 29011290 ~ 29012493 (-)
XLOC_009303 NA coding downstream 83468 29005044 ~ 29009059 (-)
XLOC_009302 eml2 coding downstream 184500 28874441 ~ 28908027 (-)
XLOC_009301 gpr4 coding downstream 232245 28822736 ~ 28860282 (-)
XLOC_009300 NA coding downstream 319953 28758455 ~ 28772574 (-)
XLOC_009306 xaf1 coding upstream 40080 29154547 ~ 29162261 (-)
XLOC_009307 si:dkey-52l18.4 coding upstream 207736 29322203 ~ 29326254 (-)
XLOC_009308 tsku coding upstream 228813 29343280 ~ 29354020 (-)
XLOC_009309 serpinh1b coding upstream 267987 29382454 ~ 29388012 (-)
XLOC_009310 BX324227.3 coding upstream 389005 29503472 ~ 29510074 (-)
XLOC_009299 BX950186.1 non-coding downstream 357486 28734927 ~ 28735041 (-)
XLOC_009296 NA non-coding downstream 496018 28594543 ~ 28596509 (-)
XLOC_009294 NA non-coding downstream 550761 28500046 ~ 28541766 (-)
XLOC_009312 NA non-coding upstream 422017 29536484 ~ 29539166 (-)
XLOC_009316 CR388369.1 non-coding upstream 535048 29649515 ~ 29665812 (-)
XLOC_009317 CR388369.1 non-coding upstream 537555 29652022 ~ 29667209 (-)
XLOC_009318 CR388369.2 non-coding upstream 555725 29670192 ~ 29670306 (-)
XLOC_009319 NA non-coding upstream 594832 29709299 ~ 29714528 (-)

Expression


Co-expression Network