XLOC_009307 (si:dkey-52l18.4)


Basic Information

Item Value
gene id XLOC_009307
gene name si:dkey-52l18.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29322203 ~ 29326254 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018297
ACAGGAAGGATATGTTCAAACTTTCCCTAAAGCCGTGGTGTTTCCTTCCTCAAGTGCAGGTTTACAACACGACTGAAGGTGCCAGATGTGTTTCAGATAATGAGCAGAGAAACTGGGTGTTTACCAAGCGGGAAAGAGTTTCGAAGAAAGTTTCCAAGTGAATTAAGTTACCTGTTGTTGGTGTAAGGAGACTTGACGGAAATCTCCGTATATCCAGTGGCAACGGGGACAGTCGAGTATGGAAAAACTATAAAGGATGAAAAAAGTTTACAGGTGGTCCTTCACAtttctggcatttctgtgtatagtAAAAGAATGTGAGCTGTGTTCATCTGTTCGCGCAAGTCGTGCTTCTGTGTTTGTGGCTGAGGGCAAAGAACTGCACTTCAGCTGTGAAGTGAGGCACTGTGGCCAAGCCAACTGGACTGGAGGATGGGCTTTCCAGGAAATGCAGAGCCAAGGATTTATTCCCCTCACTTCCTCCGAAAGAATCGAGTTGTCCGATTACAGCTCAGCAGTCAACAGCACACATCTGAAGGTCCATATTCACAACGTCAACCAATCAGACGCTGGAGCTTACAAATGCGTGATTACCTGGCCTGCTGGCACCAGTAGCAATGGTCATGTGACATATGTCAATGTGACTGCAGCAACTGGAGACTTTTCAGAAAGCAGAAGTGCCACTAATAGAGTTCTGCTGTGTCTCGGTTCCTTGGCGTGTTTTCTTGTTGTTGTGGGATTGGTTTGGTGTTTGACCCGGCTTCGTTCATCCCCTCCACCTGTCCCACCTCACACCCGCACTTCCTTTTCAGCAAGAGTGAACCCAAAAAATGAATTGGTGTATACAGAAGTTGCGGTGTGTAATTCAAGACGACGGAATGAATGTCTGGAACCAGCAACTGAGCCTGTTGTCTATTCTTCAGTGCATTTCTCTTGAACATAAAGACTTCAATCTTGAATTTCTTTCTCACATGTTGTTGAGGATTGTTGCACTTCTAAAGCAAGCATGGGGGTAAATGCATATAGTTACAATGTTAGACTGTGATGCTAGCAATGTTACACTTTGATTTAATGTCGCTGTCATGAAGAATGAATTAAAGgaattgtttatttgtatataagatgtgtgtattgtgtatataaagTTGTGTGATTGTACTTGAAATAAACTGTGACGTATCTTAACC
>TCONS_00018298
AGTATTATAAGTATTAGGTGATCATACAAAAACCTTATATTTTAAAttgctgacaaatgggtaaaacctaGTGCTTTTATAGAcagtaaatgtatataaaattgttttaaacatgTCTAAAAGTGCATTATTTACTTATTCTCATgcttaaatacagttttttttttaaatcagtattcATTTCCTTTACTAGTTTCAGCAAGAGTGAACCCAAAAAATGAATTGGTGTATACAGAAGTTGCGGTGTGTAATTCAAGACGACGGAATGAATGTCTGGAACCAGCAACTGAGCCTGTTGTCTATTCTTCAGTGCATTTCTCTTGAACATAAAGACTTCAATCTTGAATTTCTTTCTCACATGTTGTTGAGGATTGTTGCACTTCTAAAGCAAGCATGGGGGTAAATGCATATAGTTACAATGTTAGACTGTGATGCTAGCAATGTTACACTTTGATTTAATGTCGCTGTCATGAAGAATGAATTAAAGgaattgtttatttgtatataagatgtgtgtattgtgtatataaagTTGTGTGATTGTACTTGAAATAAAC

Function

symbol description
si:dkey-52l18.4 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in segmental plate; vein; and ventral mesoderm.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-19 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in segmental plate; vein; and ventral mesoderm.

Ensembl:

ensembl_id ENSDARG00000075092

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018297 False 1187 mRNA 0.43 5 29322203 29326254
TCONS_00018298 True 557 lncRNA 0.31 2 29322220 29322866

Neighbor

gene id symbol gene type direction distance location
XLOC_009306 xaf1 coding downstream 159942 29154547 ~ 29162261 (-)
XLOC_009305 zgc:162698 coding downstream 207736 29092527 ~ 29114467 (-)
XLOC_009304 dharma coding downstream 309710 29011290 ~ 29012493 (-)
XLOC_009303 NA coding downstream 313144 29005044 ~ 29009059 (-)
XLOC_009302 eml2 coding downstream 414176 28874441 ~ 28908027 (-)
XLOC_009308 tsku coding upstream 17026 29343280 ~ 29354020 (-)
XLOC_009309 serpinh1b coding upstream 56200 29382454 ~ 29388012 (-)
XLOC_009310 BX324227.3 coding upstream 177218 29503472 ~ 29510074 (-)
XLOC_009311 BX324227.2 coding upstream 201166 29527420 ~ 29534022 (-)
XLOC_009312 NA coding upstream 210230 29536484 ~ 29539166 (-)
XLOC_009300 NA non-coding downstream 549629 28758455 ~ 28772574 (-)
XLOC_009299 BX950186.1 non-coding downstream 587162 28734927 ~ 28735041 (-)
XLOC_009296 NA non-coding downstream 725694 28594543 ~ 28596509 (-)
XLOC_009294 NA non-coding downstream 780437 28500046 ~ 28541766 (-)
XLOC_009316 CR388369.1 non-coding upstream 323261 29649515 ~ 29665812 (-)
XLOC_009317 CR388369.1 non-coding upstream 325768 29652022 ~ 29667209 (-)
XLOC_009318 CR388369.2 non-coding upstream 343938 29670192 ~ 29670306 (-)
XLOC_009319 NA non-coding upstream 383045 29709299 ~ 29714528 (-)

Expression


Co-expression Network