XLOC_009308 (tsku)


Basic Information

Item Value
gene id XLOC_009308
gene name tsku
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29343280 ~ 29354020 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018299
AGATTTCAGCTGCAGTTGAAGAGAACGCTTCTACCTGTGTGACACGAAGGTCTTTTGCCTGCTTTGTAAAGCTTCTGTGTACTTGATGAAAACACcTCACCATGGCGTCTCTGCTGTGCCTCTTCTTCTCTTTGCTTGGCCTGGCTGCCATTGGTGCTGTGAAGAACTGTCATCCGCAGTGTCGGTGTGAAGTGGAGACCTTCGGCCTCTTCGACAGCTTTAGCCTTACCAAAGTGGACTGTAGCAGAATCGGCCCTGGAAACACCCCAGTCCCCATTCCTTTGGACACATCCCATCTGGACCTCTCCCTCAACTCCATCACCTCCATCAGCGACACGATGCTTTCTGGACCGGGTTACACCACCTTAGTCAGTTTGGACCTAAGCAGCAATCTTATTGCGCAAATCAGTCCCAAAGCGTTCTCCAAACTGCGTTACCTTGAGACTTTAGACTTGAGCAGCAATGCTCTCGAAGGTCTCAGCGACGGCTGCTTCACTGGACTCCCTCTAGTTGAGCTAGACCTGAGTGAAAACCAATTCAAAGAGTTCAACCTTGATCTCTTTACCACCAGGACACAGGATTTACCAATAATGGTGGACTTGTCACGAAACCTTCTTACCTCCATTTTTAGGAGAACACCAGGCCATCCGTTGTACATCAAGAGTCTTATGCTTGCAGGGAACCAATTGAAGACGGTGCCGAAACTTAATGGGATTCCACTTCAGTATCTGAACCTGGATGGAAATCTCATCTCTAGCATTGACACAGGAGCCTTTGATTCGCTGACAGAATTGGTTCACCTGTCTCTCAGCGGCCTGTCCGAACTGACCTTGATTCATCCAGGTGCTTTCAGGAGTCTGAAGAACCTGCAGGCTTTAGACTTGTCCAACAATAGCCAACTTAAGACGCTGAACCCTGATGTTTTTAGCGGACTCGTCTCTTTACAAGAGCTGAATTTGTCCAATACTGCTGTCACACCATTATCAAGGACCGTCTTTATGCAGATGCCAAACATAAAGAGTATAACTCTAGGGCCAAACGTGCATTGCTGGAAGACACACAAGCAGGGACAGTTTCACAGGCAGATTGGACAGGCCAAACCCAATGATATACTTACCTGTGACAACGCAGGACTGATCTTATGAGCCTGAAGTGCCAAGGAAAGACTTATTTTCTCATCTCTGTGCCTTAATAATATCTTATAAGACTTTTGTAGTTCAAGATTGCATCGTATTTGCACATTGTTTGCCAACCGAGGTCCACCATTTTACTTGTTCGTCACATTTCAGTATATCGCAATGACTCGTGCACTTTAGTTACCACATTTCTGTTCTTCTACTTAAAGTCAGTTGAGATCTGCAGTGTGTTGTCAGCTCTGATGTGATGtgtttgatttggtttggttCAACACAGAACTTAGTCTTAAAGTTTCTTTAGTTGTGTGTAAATGTACACCAGTTTTGAAGTTATGGTACCATAGATAGTAttcagtttacccaaaaatgaaaagtttgcCATCAATTACTCGCCTTCACTTGTTTTGGACCTGCTtttttatgattatgatgatgatgatcatgatgatgataaagaacacaaaagaagttattttgataaatgttggaAATGTGTAGCCTTTCACTTCTTAAGTGTTTCCTATTAAAGATGTCGATGGCTATCGTTTTCCAGCACtcttcaaaataccttattttgtgccaacagaaaaaagaaattaatgcAGGATTGGAACTACTTAAGTAAATGGTGATGAAATTTCCATTTTTGGTGTAAACTATTCCTTTCAATTTACACCAACACAtaggttgtatttatttattttttattaatttacagtgaacCACAAACATTGAGGGCGATAAGTAAAAGTGTTTTACTCGTTTCAAGTGGAGCTTTTTAATAGAATCACTAAGTTTGAAATCACTATTtggaatttacattttaatgctgaataaaaaaatgtattaatcagttTAGCGTtgcaaactaaaaaataaaatattctctACACATCACTCAGACTGACACTTGAAGGAAATGTAACGTTAACTAGTTCACAACCTTTTAATTCCTAAGTCGTCATTTCACAGACGTTTACATAATATTGCTCTGAAATTTTGCACTTTTGATGTTCTTATAAGATTTGtataaatttttaaaagaaaatgcatgatGGTTGTTCATCATGTGAGATGTTTTACGTTTGTACAAAACTATACTCCTAATAAAAGATAATCAACTTTA
>TCONS_00018300
ATCGCTGAGTGAAACTCTAGACGAGTCTGCTTGCGGTGGCGTTTATCGCTTCATCTTTTGCGGCGAGACTGTAGCCGATAACTACATCGACAAAATCACAACCCAAACAGTACCGCAAACGAGCTCGTTCGCCCCGCGACAAAACGCCCTGGATATGACAGTCACCAAAGCTGAAGGCTTTTCCGATGCTGGCCTGGAAAAGTAAGAGCTCTCCGGCGGACGAGTCGCGGCACATGcTCACCATGGCGTCTCTGCTGTGCCTCTTCTTCTCTTTGCTTGGCCTGGCTGCCATTGGTGCTGTGAAGAACTGTCATCCGCAGTGTCGGTGTGAAGTGGAGACCTTCGGCCTCTTCGACAGCTTTAGCCTTACCAAAGTGGACTGTAGCAGAATCGGCCCTGGAAACACCCCAGTCCCCATTCCTTTGGACACATCCCATCTGGACCTCTCCCTCAACTCCATCACCTCCATCAGCGACACGATGCTTTCTGGACCGGGTTACACCACCTTAGTCAGTTTGGACCTAAGCAGCAATCTTATTGCGCAAATCAGTCCCAAAGCGTTCTCCAAACTGCGTTACCTTGAGACTTTAGACTTGAGCAGCAATGCTCTCGAAGGTCTCAGCGACGGCTGCTTCACTGGACTCCCTCTAGTTGAGCTAGACCTGAGTGAAAACCAATTCAAAGAGTTCAACCTTGATCTCTTTACCACCAGGACACAGGATTTACCAATAATGGTGGACTTGTCACGAAACCTTCTTACCTCCATTTTTAGGAGAACACCAGGCCATCCGTTGTACATCAAGAGTCTTATGCTTGCAGGGAACCAATTGAAGACGGTGCCGAAACTTAATGGGATTCCACTTCAGTATCTGAACCTGGATGGAAATCTCATCTCTAGCATTGACACAGGAGCCTTTGATTCGCTGACAGAATTGGTTCACCTGTCTCTCAGCGGCCTGTCCGAACTGACCTTGATTCATCCAGGTGCTTTCAGGAGTCTGAAGAACCTGCAGGCTTTAGACTTGTCCAACAATAGCCAACTTAAGACGCTGAACCCTGATGTTTTTAGCGGACTCGTCTCTTTACAAGAGCTGAATTTGTCCAATACTGCTGTCACACCATTATCAAGGACCGTCTTTATGCAGATGCCAAACATAAAGAGTATAACTCTAGGGCCAAACGTGCATTGCTGGAAGACACACAAGCAGGGACAGTTTCACAGGCAGATTGGACAGGCCAAACCCAATGATATACTTACCTGTGACAACGCAGGACTGATCTTATGAGCCTGAAGTGCCAAGGAAAGACTTATTTTCTCATCTCTGTGCCTTAATAATATCTTATAAGACTTTTGTAGTTCAAGATTGCATCGTATTTGCACATTGTTTGCCAACCGAGGTCCACCATTTTACTTGTTCGTCACATTTCAGTATATCGCAATGACTCGTGCACTTTAGTTACCACATTTCTGTTCTTCTACTTAAAGTCAGTTGAGATCTGCAGTGTGTTGTCAGCTCTGATGTGATGtgtttgatttggtttggttCAACACAGAACTTAGTCTTAAAGTTTCTTTAGTTGTGTGTAAATGTACACCAGTTTTGAAGTTATGGTACCATAGATAGTAttcagtttacccaaaaatgaaaagtttgcCATCAATTACTCGCCTTCACTTGTTTTGGACCTGCTtttttatgattatgatgatgatgatcatgatgatgataaagaacacaaaagaagttattttgataaatgttggaAATGTGTAGCCTTTCACTTCTTAAGTGTTTCCTATTAAAGATGTCGATGGCTATCGTTTTCCAGCACtcttcaaaataccttattttgtgccaacagaaaaaagaaattaatgcAGGATTGGAACTACTTAAGTAAATGGTGATGAAATTTCCATTTTTGGTGTAAACTATTCCTTTCAATTTACACCAACACAtaggttgtatttatttattttttattaatttacagtgaacCACAAACATTGAGGGCGATAAGTAAAAGTGTTTTACTCGTTTCAAGTGGAGCTTTTTAATAGAATCACTAAGTTTGAAATCACTATTtggaatttacattttaatgctgaataaaaaaatgtattaatcagttTAGCGTtgcaaactaaaaaataaaatattctctACACATCACTCAGACTGACACTTGAAGGAAATGTAACGTTAACTAGTTCACAACCTTTTAATTCCTAAGTCGTCATTTCACAGACGTTTACATAATATTGCTCTGAAATTTTGCACTTTTGATGTTCTTATAAGATTTGtataaatttttaaaagaaaatgcatgatGGTTGTTCATCATGTGAGATGTTTTACGTTTGTACAAAACTATACTCCTAATAAAAGATAATCAACTTTA

Function

symbol description
tsku Predicted to be involved in energy homeostasis and growth plate cartilage chondrocyte development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including germ ring; margin; mesoderm; pectoral fin bud; and tail bud. Orthologous to human TSKU (tsukushi, small leucine rich proteoglycan).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-030131-4683 Predicted to be involved in energy homeostasis and growth plate cartilage chondrocyte development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including germ ring; margin; mesoderm; pectoral fin bud; and tail bud. Orthologous to human TSKU (tsukushi, small leucine rich proteoglycan).

Ensembl:

ensembl_id ENSDARG00000040815

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018299 False 2262 mRNA 0.40 2 29343280 29348212
TCONS_00018300 True 2403 mRNA 0.41 2 29343280 29354020

Neighbor

gene id symbol gene type direction distance location
XLOC_009307 si:dkey-52l18.4 coding downstream 17026 29322203 ~ 29326254 (-)
XLOC_009306 xaf1 coding downstream 181019 29154547 ~ 29162261 (-)
XLOC_009305 zgc:162698 coding downstream 228813 29092527 ~ 29114467 (-)
XLOC_009304 dharma coding downstream 330787 29011290 ~ 29012493 (-)
XLOC_009303 NA coding downstream 334221 29005044 ~ 29009059 (-)
XLOC_009309 serpinh1b coding upstream 28434 29382454 ~ 29388012 (-)
XLOC_009310 BX324227.3 coding upstream 149452 29503472 ~ 29510074 (-)
XLOC_009311 BX324227.2 coding upstream 173400 29527420 ~ 29534022 (-)
XLOC_009312 NA coding upstream 182464 29536484 ~ 29539166 (-)
XLOC_009313 hspa13 coding upstream 195095 29549115 ~ 29556757 (-)
XLOC_009300 NA non-coding downstream 570706 28758455 ~ 28772574 (-)
XLOC_009299 BX950186.1 non-coding downstream 608239 28734927 ~ 28735041 (-)
XLOC_009296 NA non-coding downstream 746771 28594543 ~ 28596509 (-)
XLOC_009294 NA non-coding downstream 801514 28500046 ~ 28541766 (-)
XLOC_009316 CR388369.1 non-coding upstream 295495 29649515 ~ 29665812 (-)
XLOC_009317 CR388369.1 non-coding upstream 298002 29652022 ~ 29667209 (-)
XLOC_009318 CR388369.2 non-coding upstream 316172 29670192 ~ 29670306 (-)
XLOC_009319 NA non-coding upstream 355279 29709299 ~ 29714528 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02989765_02990808 TSKU coding CI01000053 null 2989765 ~ 2992169 (+)