XLOC_009309 (serpinh1b)


Basic Information

Item Value
gene id XLOC_009309
gene name serpinh1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29382454 ~ 29388012 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018301
CCCGCAGCCAGAAAAAGAATTCAGTTTGACGTGGCACTGTTGGGGGAGGATGTGAGATGTGGGAACAAGCCTCTGCATCCCCCGACAGAAGAATCTAGAAGGAATGCTGACAAAGACAGACTCAAACTCaatcaataaatcagttattttataCATCCAGAGGTCAATCGTGTGATTTAAAGAGAAACATTATGTTCTTGTGTTAAAATTCATATGCTGTTGTTCAAACCAACTGCCAACTCAGCACTGCAAATGTGAGCTCGACGATAAAACGTTGCATGCTACAAAACATTATCATCCTTCCTTACAAACTTTATGCCAAAACAACACATTTTCACCAGTTTTAATGaaaataacaatagtttgtttgCAAAGTACAGCTGTTTTCAGAAGGCTTTAGGACCTTGCAGAGGTGGTCATTTGATCCAGAGGGAGGGCTTTCTCTGCATCCCCAGGAAATCCAGACATCCTCATTTGAATAGCCCGTGTCCAGCTTCTAGAAGTTTCTTTCCTGGAGTATAAAGGCCTCTGCTTCAAACACAGCAAACCAGCatccaagaagaagaagaagaagaagaaggagaaggagaaaaagaagaagacTACGAAGAAGAAGACGAAAAagacaaagaagaagaagaagaagaagaacatcTGAGAAGAGGAGAGGAAAAAAGAGGAAAACATCCAAACAGCTGTCCAAGGCTTTTCGTATCCAAAAATCCAGCCAGAATGTGGGTATCCAGCCTCATTGCTCTGTGCCTTTTGGCTGTGGCCGTGTCCGGTGAGGACAAAAAGTTGAGCACTCATGCAACCTCCATGGCAGACACCAGCGCCAATCTGGCCTTCAATCTCTACCACAATGTGGCTAAAGAAAAGGGTCTCGAGAACATCCTCATCTCACCTGTGGTGGTGGCATCTTCTCTTGGTATGGTGGCAATGGGAAGCAAGTCCTCCACTGCATCCCAGGTGAAGAGCGTCCTGAAGGCTGACGCTCTGAAAGACGAGCATCTGCATACGGGCTTATCAGAGCTTCTGACTGAGGTCAGTGACCCGCAGACCCGCAATGTGACGTGGAAAATCAGTAACAGGCTGTACGGCCCCAGCTCTGTCAGCTTTGCTGAAGACTTTGTTAAGAACAGCAAGAAGCACTACAACTACGAGCACTCCAAAATCAACTTCCGCGACAAGAGAAGTGCTATTAACTCCATCAATGAGTGGGCCGCCAAGACAACTGATGGAAAGCTGCCAGAAATTACAAAGGATGTGAAAAACACAGACGGGGCTATGATCGTCAATGCTATGTTCTTCAAACCCCACTGGGATGAGaagttccaccacaagatggttGACAACCGTGGTTTCCTGGTGACCCGCTCTCACACAGTCTCTGTCCCAATGATGCATCGCACAGGAATCTACGGCTTCTATGAAGACACGGAGAACAGGTTTCTAATAGTCAGCATGCCTTTGGCGCATAAGAAGTCCAGCATGATTTTCATCATGCCGTACCACGTGGAGCCTCTGGATCGGCTGGAGAATCTTCTCACCCGCCAGCAGCTGGACACCTGGATTAGCAAACTTGAGGAGAGAGCGGTCGCCATCTCTTTGCCCAAAGTGAGCATGGAAGTCAGCCACGACCTTCAGAAACATCTTGGAGAACTCGGTCTCACTGAAGCTGTGGACAAGTCTAAGGCAGATCTGTCCAACATTTCCGGCAAGAAAGACCTTTACCTCTCCAATGTCTTCCATGCCTCCTCCTTGGAGTGGGACACAGAGGGAAACCCATTTGACCCCAGCATTTTCGGCAGTGAGAAGATGAGGAACCCCAAGCTCTTTTACGCCGACCATCCCTTCATTTTCCTTGTGAAAGACAACAAGACCAACTCCATCCTTTTTATTGGCAGGCTAGTTCGCCCTAAGGGTGATAAGATGAGAGATGAATTGTAACTTTTAGGCTATTTGAATGAACTTTtggaaatttattttttattattattttttttcaaactgttattattgtaattaatggTGTTACCTCAGGTGTATGGACAATCTAAGTGAATTTGTCAGTACAAAAGCATTGTTTAAGAAGATAGGTGGTATGTGTCAGGAGCAATGGTAGAAATAAGTGAGATATATTTGAACCGCACAAAAGGACCAGTGGTTTGACATCAATTATGTCATGTGAATTATTCAATTAAACACTATGCTTACATTAAGTGTAGTGTAATTGATGTTGAGCCATGGTGTTATGATATTCATGATAGTGCTTGTAGAACCTCTCTTTATGAGTTTGTAACATCTGGGTAGGGTTGACCTTATCTTTAATGTTTAAAGGGAAAAGGTAATCCTACTCAATTGTTTCTTAAAGCACAGTTTTGTAGGCTCTTTTATTTCACTTTCATCCAACAAAACGAACTGCTGCAGAAATTTCCAGGTTGACAAATGCCATGTTTTGATATGTCTTAATTCTAAAAATGTTTTGAGCAAGTTTTTCCTtctttttgtcatcatttttttcAATAAACTGAAATGGAAAATATCTATAATATCATGtcttttttatacttttaaattatttagaattataaaTAATACATCATTATAAAGGTgctgcggtggcgcagtgggtagccacatcacctcacagcaagaaggttgctagtttgagtctcggctatgtcagttgccatttttgtgtggagtttgcatgttctccccttgttgcgGTGGCTTTCTtccgggcgctccggtttcccccacaagtccaaagacatgcagtataggtgaattagataagctaaattgtccgcagtgtacgTGAGTAAATGAGAGtaaatgaatgtttcccagtggtgggttgcagctggaagggcatcagcagcgtaaaatatgctggataagttggctgtttattccgctgtggtgaccccagattaataaagggactgagccaaaaagaaaatgaatgaatgaatgaatgaatgaatgattgaacataaagaagttgatgttaacatgaaataaaacaaataaaaccaacAAATGGCAGATAAAAGCTCGGTGGCTTGCCTCATAAAAATTGAACTTTGGTAACCACATGGTTTGCACATGGTTTGCACATAATAAATCGTTATTAAAAAAACACTCTGTGGgaatcatttttgtaatttacaagTGAGGCAAAACATTTACCGCCTGATCACCACAcatcacataaataaacaatattgtatTTTCAATTATAAAAAGGGTGAAACTTGATCAATTTGAATActgtttacattattaa
>TCONS_00018302
TCCTGGAGTATAAAGGCCTCTGCTTCAAACACAGCAAACCAGCatccaagaagaagaagaagaagaagaaggagaaggagaaaaagaagaagacTACGAAGAAGAAGACGAAAAagacaaagaagaagaagaagaagaagaacatcTGAGAAGAGGAGAGGAAAAAAGAGGAAAACATCCAAACAGCTGTCCAAGAGTGAAAATCCATATCGTTGACAACTATGAATATGAAAACATATCAAGGCTTTTCGTATCCAAAAATCCAGCCAGAATGTGGGTATCCAGCCTCATTGCTCTGTGCCTTTTGGCTGTGGCCGTGTCCGGTGAGGACAAAAAGTTGAGCACTCATGCAACCTCCATGGCAGACACCAGCGCCAATCTGGCCTTCAATCTCTACCACAATGTGGCTAAAGAAAAGGGTCTCGAGAACATCCTCATCTCACCTGTGGTGGTGGCATCTTCTCTTGGTATGGTGGCAATGGGAAGCAAGTCCTCCACTGCATCCCAGGTGAAGAGCGTCCTGAAGGCTGACGCTCTGAAAGACGAGCATCTGCATACGGGCTTATCAGAGCTTCTGACTGAGGTCAGTGACCCGCAGACCCGCAATGTGACGTGGAAAATCAGTAACAGGCTGTACGGCCCCAGCTCTGTCAGCTTTGCTGAAGACTTTGTTAAGAACAGCAAGAAGCACTACAACTACGAGCACTCCAAAATCAACTTCCGCGACAAGAGAAGTGCTATTAACTCCATCAATGAGTGGGCCGCCAAGACAACTGATGGAAAGCTGCCAGAAATTACAAAGGATGTGAAAAACACAGACGGGGCTATGATCGTCAATGCTATGTTCTTCAAACCCCACTGGGATGAGaagttccaccacaagatggttGACAACCGTGGTTTCCTGGTGACCCGCTCTCACACAGTCTCTGTCCCAATGATGCATCGCACAGGAATCTACGGCTTCTATGAAGACACGGAGAACAGGTTTCTAATAGTCAGCATGCCTTTGGCGCATAAGAAGTCCAGCATGATTTTCATCATGCCGTACCACGTGGAGCCTCTGGATCGGCTGGAGAATCTTCTCACCCGCCAGCAGCTGGACACCTGGATTAGCAAACTTGAGGAGAGAGCGGTCGCCATCTCTTTGCCCAAAGTGAGCATGGAAGTCAGCCACGACCTTCAGAAACATCTTGGAGAACTCGGTCTCACTGAAGCTGTGGACAAGTCTAAGGCAGATCTGTCCAACATTTCCGGCAAGAAAGACCTTTACCTCTCCAATGTCTTCCATGCCTCCTCCTTGGAGTGGGACACAGAGGGAAACCCATTTGACCCCAGCATTTTCGGCAGTGAGAAGATGAGGAACCCCAAGCTCTTTTACGCCGACCATCCCTTCATTTTCCTTGTGAAAGACAACAAGACCAACTCCATCCTTTTTATTGGCAGGCTAGTTCGCCCTAAGGGTGATAAGATGAGAGATGAATTGTAACTTTTAGGCTATTTGAATGAACTTTtggaaatttattttttattattattttttttcaaactgttattattgtaattaatggTGTTACCTCAGGTGTATGGACAATCTAAGTGAATTTGTCAGTACAAAAGCATTGTTTAAGAAGATAGGTGGTATGTGTCAGGAGCAATGGTAGAAATAAGTGAGATATATTTGAACCGCACAAAAGGACCAGTGGTTTGACATCAATTATGTCATGTGAATTATTCAATTAAACACTATGCTTACATTAAGTGTAGTGTAATTGATGTTGAGCCATGGTGTTATGATATTCATGATAGTGCTTGTAGAACCTCTCTTTATGAGTTTGTAACATCTGGGTAGGGTTGACCTTATCTTTAATGTTTAAAGGGAAAAGGTAATCCTACTCAATTGTTTCTTAAAGCACAGTTTTGTAGGCTCTTTTATTTCACTTTCATCCAACAAAACGAACTGCTGCAGAAATTTCCAGGTTGACAAATGCCATGTTTTGATATGTCTTAATTCTAAAAATGTTTTGAGCAAGTTTTTCCTtctttttgtcatcatttttttcAATAAACTGAAATGGAAAATA
>TCONS_00018303
CCCACTGGGATGAGaagttccaccacaagatggttGACAACCGTGGTTTCCTGGTGACCCGCTCTCACACAGTCTCTGTCCCAATGATGCATCGCACAGGTACTGTAAACCCAACAGCCTGTTGTCTCCTATTAAAAAGTCAATAATATCCACATAGGTATTTAACAGTTCTCGTCTTTTACAGGAATCTACGGCTTCTATGAAGACACGGAGAACAGGTTTCTAATAGTCAGCATGCCTTTGGCGCATAAGAAGTCCAGCATGATTTTCATCATGCCGTACCACGTGGAGCCTCTGGATCGGCTGGAGAATCTTCTCACCCGCCAGCAGCTGGACACCTGGATTAGCAAACTTGAGGAGAGAGCGGTCGCCATCTCTTTGCCCAAAGTGAGCATGGAAGTCAGCCACGACCTTCAGAAACATCTTGGAGAACTCGGTCTCACTGAAGCTGTGGACAAGTCTAAGGCAGATCTGTCCAACATTTCCGGCAAGAAAGACCTTTACCTCTCCAATGTCTTCCATGCCTCCTCCTTGGAGTGGGACACAGAGGGAAACCCATTTGACCCCAGCATTTTCGGCAGTGAGAAGATGAGGAACCCCAAGCTCTTTTACGCCGACCATCCCTTCATTTTCCTTGTGAAAGACAACAAGACCAACTCCATCCTTTTTATTGGCAGGCTAGTTCGCCCTAAGGGTGATAAGATGAGAGATGAATTGTAACTTTTAGGCTATTTGAATGAACTTTtggaaatttattttttattattattttttttcaaactgttattattgtaattaatggTG
>TCONS_00018304
agaagaagaagaaggagaaggagaaaaagaagaagacTACGAAGAAGAAGACGAAAAagacaaagaagaagaagaagaagaagaacatcTGAGAAGAGGAGAGGAAAAAAGAGGAAAACATCCAAACAGCTGTCCAAGGCTTTTCGTATCCAAAAATCCAGCCAGAATGTGGGTATCCAGCCTCATTGCTCTGTGCCTTTTGGCTGTGGCCGTGTCCGGTGAGGACAAAAAGTTGAGCACTCATGCAACCTCCATGGCAGACACCAGCGCCAATCTGGCCTTCAATCTCTACCACAATGTGGCTAAAGAAAAGGGTCTCGAGAACATCCTCATCTCACCTGTGGTGGTGGCATCTTCTCTTGGTATGGTGGCAATGGGAAGCAAGTCCTCCACTGCATCCCAGGTGAAGAGCGTCCTGAAGGCTGACGCTCTGAAAGACGAGCATCTGCATACGGGCTTATCAGAGCTTCTGACTGAGGTCAGTGACCCGCAGACCCGCAATGTGACGTGGAAAATCAGTAACAGGCTGTACGGCCCCAGCTCTGTCAGCTTTGCTGAAGACTTTGTTAAGAACAGCAAGAAGCACTACAACTACGAGCACTCCAAAATCAACTTCCGCGACAAGAGAAGTGCTATTAACTCCATCAATGAGTGGGCCGCCAAGACAACTGATGGAAAGCTGCCAGAAATTACAAAGGATGTGAAAAACACAGACGGGGCTATGATCGTCAATGCTATGTTCTTCAAACCCCACTGGGATGAGaagttccaccacaagatggttGACAACCGTGGTTTCCTGGTGACCCGCTCTCACACAGTCTCTGTCCCAATGATGCATCGCACAG
>TCONS_00018305
CTAATATTCAACATTAAGCACATTTCAGAAATGCCTAAAAAACAGGCTCATGTTTAAGGGATAattcaccacaaaaaaaaaaggtatttgctgttaatttactcaccctagtGTCCATCAAAGACAAAGCTGActgaaacatattttaataaaaaatttagcaGTCAACAGCTCCTAGCACTTTGAGAGTAAAAACCATATACAGGTAAAATAAAGGTAATACCCATGGCTCTTGAAAACACCTTAAGGTCAGTTTGTTCAGGAATTTACAACCTTATTATATTTAATCTTTACAATCTTTGATCAGCCTCTGTGTTGTGtcttgaatgaattaatgataggCTAGACTCTAGAGCAAAAGCTtccagttgttttgtttttgggtgaactatccctttaagcagcaCATTCCCGTGAGATTAGTCTACGCCGCTGCTATTGTTTAACTGGTCTAGAAAACATGACCTACAGGTTTAATTTCTGTAGGTTTACCAATTTACAATACAAAGACTTAAATAAAAgtgataaaaaacattaaaaaacactaGTTTGCAGCCTTTTGTTTCTATAAAACTGACacatgaaatattaaaattagCCTTTATATTGTACAACTGCtttggtctaaaaaaaaaaacataacctaCAGCCTTAATTTCTGTAGGTTTACCAATTTAGTTTGCAGCCTTTTGTTTCTAAATCTGACACATGGAAtattaaaatgagcatttctgATAAATTGGGCAATTTGCACTAAGTATCACTTGTAATCTCTCTGCTATAGGCTTTTCGTATCCAAAAATCCAGCCAGAATGTGGGTATCCAGCCTCATTGCTCTGTGCCTTTTGGCTGTGGCCGTGTCCGGTGAGGACAAAAAGTTGAGCACTCATGCAACCTCCATGGCAGACACCAGCGCCAATCTGGCCTTCAATCTCTACCACAATGTGGCTAAAGAAAAGGGTCTCGAGAACATCCTCATCTCACCTGTGGTGGTGGCATCTTCTCTTGGTATGGTGGCAATGGGAAGCAAGTCCTCCACTGCATCCCAGGTGAAGAGCGTCCTGAAGGCTGACGCTCTGAAAGACGAGCATCTGCATACGGGCTTATCAGAGCTTCTGACTGAGGTCAGT

Function

symbol description
serpinh1b Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within fin regeneration. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including ectoderm; fin; germ ring; mesenchyme derived from head mesoderm; and mesoderm. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 10 and preterm premature rupture of the membranes. Orthologous to human SERPINH1 (serpin family H member 1).

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0030199 collagen fibril organization biological_process
GO:0031101 fin regeneration biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005615 extracellular space cellular_component
GO:0005518 collagen binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-93 Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within fin regeneration. Predicted to be located in extracellular space. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including ectoderm; fin; germ ring; mesenchyme derived from head mesoderm; and mesoderm. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 10 and preterm premature rupture of the membranes. Orthologous to human SERPINH1 (serpin family H member 1).

Ensembl:

ensembl_id ENSDARG00000019949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018301 False 3295 mRNA 0.42 5 29382454 29388012
TCONS_00018302 False 2084 mRNA 0.43 6 29383204 29387503
TCONS_00018303 False 804 lncRNA 0.45 2 29383715 29384612
TCONS_00018304 False 848 mRNA 0.49 3 29384514 29387446
TCONS_00018305 True 1130 processed_transcript 0.38 2 29385133 29386439

Neighbor

gene id symbol gene type direction distance location
XLOC_009308 tsku coding downstream 28434 29343280 ~ 29354020 (-)
XLOC_009307 si:dkey-52l18.4 coding downstream 56200 29322203 ~ 29326254 (-)
XLOC_009306 xaf1 coding downstream 220193 29154547 ~ 29162261 (-)
XLOC_009305 zgc:162698 coding downstream 267987 29092527 ~ 29114467 (-)
XLOC_009304 dharma coding downstream 369961 29011290 ~ 29012493 (-)
XLOC_009310 BX324227.3 coding upstream 115460 29503472 ~ 29510074 (-)
XLOC_009311 BX324227.2 coding upstream 139408 29527420 ~ 29534022 (-)
XLOC_009312 NA coding upstream 148472 29536484 ~ 29539166 (-)
XLOC_009313 hspa13 coding upstream 161103 29549115 ~ 29556757 (-)
XLOC_009314 samsn1a coding upstream 176352 29564364 ~ 29586747 (-)
XLOC_009303 NA non-coding downstream 373395 29005044 ~ 29009059 (-)
XLOC_009300 NA non-coding downstream 609880 28758455 ~ 28772574 (-)
XLOC_009299 BX950186.1 non-coding downstream 647413 28734927 ~ 28735041 (-)
XLOC_009296 NA non-coding downstream 785945 28594543 ~ 28596509 (-)
XLOC_009294 NA non-coding downstream 840688 28500046 ~ 28541766 (-)
XLOC_009316 CR388369.1 non-coding upstream 261503 29649515 ~ 29665812 (-)
XLOC_009317 CR388369.1 non-coding upstream 264010 29652022 ~ 29667209 (-)
XLOC_009318 CR388369.2 non-coding upstream 282180 29670192 ~ 29670306 (-)
XLOC_009319 NA non-coding upstream 321287 29709299 ~ 29714528 (-)

Expression


Co-expression Network