XLOC_009313 (hspa13)


Basic Information

Item Value
gene id XLOC_009313
gene name hspa13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29549115 ~ 29556757 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018308
AACCCCCATAAGCCGAACATCTCATATTAGGTTGACGTGTTATGTTCACGCAGTCGGCGCAGATACTGAATGAACATCTCTTAAACAGTTATTCAATACATACTGGGTTGGAGACATGGCCGGAGAAATGTCAATGATAGGTTCTGTCATCCTGGCTCTACTTCTGGCTGGGTATCTGGGACAGCAGTATCTACCGCCTCCAAAGCCCAGGGTCATTGGGCTGGATCTTGGGACCACGTTCTGCTCTGTGGGAGTGCTTCAGCCTGGCACTGGCGAGATTGAAATTATCGAAGATGACAAAGGTCGCAAAAGCATCCCGAGTGTGGTGTCATTCACTCTGACCGGTGTGTTTGCTGGACATGAGGGCCAGGAACTGTCTGACGTAAATCCTCAAAATACAATCTATGATGCTAAGAGATTTATTGGAAAGATTTTCGATGAAGAGACTTTAGAAAAAGAGAGTGCAAGATACCCATTTAAGGTGATATTCAACAATGGCAGTGCAGATTTTTTAGTCAATACAAACAGCACTTTCACGGTTACTCCTGAATTTATCGGATCCCGTCTCCTGCTGAAAATGAGGAAGATGGCTGAGAAGCAGCTGGGAGTTCCTGTCGAGAAAGCGGTCATATCAGTGCCAGCAGAGTTTGATGAGAGGCAGAGAAACTACACCATAAGAGCTGCTAACCTAGCTGgACTGGATGTCCTGCGGGTGATCAATGAGCCCACAGCAGCAGCGATGGCATATGGACTGCATAAGGCTGAGGTGTTTAATGTGCTGGTGGTGGATCTGGGGGGAGGAACACTAGATGTGTCACTACTCAATAAACAGGGCGGCATGTTCCTCACCAGAGCTATGGCAGGTAATAACCAGCTCGGAGGGCAGGACTTCACCCAGCGTTTGCTCCAGTACACCACAGAGCGAGTTCGGCAGCAATATGGCGTTCCCCCTACTCTTAAAGAAGACATCCATCTCCTCCGACAGGCTGTAGAGGCCGCCAAACTTAACCTCACCCAAGAACCTCACGTTCACCTCCGAGTTCCTCTGTACCTCCAGATGACAGGAGCCAGCGGAGCGCAAGAGGAGAAAGTCCTGTTTGAGGAGAAGCTGACCAGGGAGACATTTGAGGAGCTCAATGCCGACCTCTTCCAGAAGATCCTGGCTCCCATCGAGACCGTCCTCGTCGAGGGCCATCTGGACAAGCAGGAGGTGGATGAGATTGTCCTGGTTGGAGGGTCTACGCGGATCCCTCGGATCCGGCAGCTCATCAGTCAATATTTCGGAAAGGAGCCGAACACGTCAGTGGACCCGGACTTGGCAGTGGTGACCGGTGTGGCCATTCAGGCAGGCATTATGGGTGGTTCTTGGCCTCTTCAAGTCAGTGCAATTGAAATTCCCAATAGACATCTTCGCAAGACTAACTTTAGTTGATCTTTTATTTGTCATATGACTGCTTTGTGCCAGCAAACCAAAAGATGGTTGAGTGACATTGCTTCCTCATGTCTTTGCTTCCTCAAATGCATTAGTTTCAGAGTTAATCAAGACCAACGCAGCAGTTATGTGAAGATGTGGtcttcagaacagacgcagagTATTTATTTAGTTCTTCATTATATCAATAGCATCAAGGAGATGCTTTTCTACTGTATCCAGAGCAAGTGTCTGTTTTGGGGTGTGcgatatttattatattatattatataatataatatcaaaacTGAGGTTTTGATAATGTGCAAGCATTATTGTGATTGTGCATTATCATGTCAGTCACTTTGAGgaagaaaaaaagtaaacaaacacacTGGATTTGTTATGTATAAGTAATCATATGATTAACTGATATCACTAAAGCAAGGGTGCAGTTTGTTTTTGAAACGTCAACTTAAATGCGATATTGATTTAGCAAcagttaaaaaataagtaaatattaagtgacattttagacacaatattgtcagttttgtttttcaaacacagTAAAATAgtttaaagcagaa
>TCONS_00018309
CTCATATTAGGTTGACGTGTTATGTTCACGCAGTCGGCGCAGATACTGAATGAACATCTCTTAAACAGTTATTCAATACATACTGGGTTGGAGACATGGCCGGAGAAATGTCAATGATAGGTTCTGTCATCCTGGCTCTACTTCTGGCTGGGTATCTGGGACAGCAGTATCTACCGCCTCCAAAGCCCAGGGTCATTGGGCTGGATCTTGGGACCACGTTCTGCTCTGTGGGAGTGCTTCAGCCTGGCACTGGCGAGATTGAAATTATCGAAGATGACAAAGGTCGCAAAAGCATCCCGAGTGTGGTGTCATTCACTCTGACCGGTGTGTTTGCTGGACATGAGGGCCAGGAACTGTCTGACGTAAATCCTCAAAATACAATCTATGATGCTAAGAGATTTATTGGAAAGATTTTCGATGAAGAGACTTTAGAAAAAGAGAGTGCAAGATACCCATTTAAGGTAAAAAAATTTTCTTGTTACACTCTATCATTTCTTATCGTGTCTCTGACATTATCATTGCTATTTTGCAGGTGATATTCAACAATGGCAGTGCAGATTTTTTAGTCAATACAAACAGCACTTTCACGGTTACTCCTGAATTTATCGGATCCCGTCTCCTGCTGAAAATGAGGAAGATGGCTGAGAAGCAGCTGGGAGTTCCTGTCGAGAAAGCGGTCATATCAGTGCCAGCAGAGTTTGATGAGAGGCAGAGAAACTACACCATAAGAGCTGCTAACCTAGCTGGTCAGTTTTAGGATTCAGTTTTTAAGCTTGCATTTCATTT

Function

symbol description
hspa13 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be located in endoplasmic reticulum. Predicted to be active in mitochondrion. Is expressed in liver and post-vent region. Orthologous to human HSPA13 (heat shock protein family A (Hsp70) member 13).

GO:

id name namespace
GO:0006986 response to unfolded protein biological_process
GO:0034620 cellular response to unfolded protein biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0042026 protein refolding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0044183 protein folding chaperone molecular_function
GO:0051787 misfolded protein binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-58 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be located in endoplasmic reticulum. Predicted to be active in mitochondrion. Is expressed in liver and post-vent region. Orthologous to human HSPA13 (heat shock protein family A (Hsp70) member 13).

Ensembl:

ensembl_id ENSDARG00000040984

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018308 False 2001 mRNA 0.45 5 29549115 29556757
TCONS_00018309 True 786 lncRNA 0.44 2 29555324 29556737

Neighbor

gene id symbol gene type direction distance location
XLOC_009312 NA coding downstream 9949 29536484 ~ 29539166 (-)
XLOC_009311 BX324227.2 coding downstream 15093 29527420 ~ 29534022 (-)
XLOC_009310 BX324227.3 coding downstream 39041 29503472 ~ 29510074 (-)
XLOC_009309 serpinh1b coding downstream 161103 29382454 ~ 29388012 (-)
XLOC_009308 tsku coding downstream 195095 29343280 ~ 29354020 (-)
XLOC_009314 samsn1a coding upstream 7607 29564364 ~ 29586747 (-)
XLOC_009315 si:ch211-207n23.2 coding upstream 36790 29593547 ~ 29598679 (-)
XLOC_009316 CR388369.1 coding upstream 92758 29649515 ~ 29665812 (-)
XLOC_009317 CR388369.1 coding upstream 95265 29652022 ~ 29667209 (-)
XLOC_009318 CR388369.2 coding upstream 113435 29670192 ~ 29670306 (-)
XLOC_009303 NA non-coding downstream 540056 29005044 ~ 29009059 (-)
XLOC_009300 NA non-coding downstream 776541 28758455 ~ 28772574 (-)
XLOC_009299 BX950186.1 non-coding downstream 814074 28734927 ~ 28735041 (-)
XLOC_009296 NA non-coding downstream 952606 28594543 ~ 28596509 (-)
XLOC_009319 NA non-coding upstream 152542 29709299 ~ 29714528 (-)
XLOC_009320 CR848812.1 non-coding upstream 213854 29770611 ~ 29820800 (-)

Expression


Co-expression Network