XLOC_009317 (CR388369.1)


Basic Information

Item Value
gene id XLOC_009317
gene name CR388369.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 29652022 ~ 29667209 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018316
GCCGCCCATTCTAAAAGTTATGTCGGCCCACCGGCGTTTTTTTGGGTGGCATGCCACCAGCGGATTACCGTGGGTGGACCGCCGTCTGGACACCAGTGGCTAACCGATGGCCCACCCGGtgatgtttttaatgttgttggCTGTTCTGTACCTGATAAGTACTTTTGtttaacactttttacattttaaacaaatgaggcactaaataaaaatatagttattaataaaagcaaagtttagtaaataaaactacaagaggttttaaatataacaggttattattaaaacaaaacaaaattaagtttaaaaatcaagatttaatattaaatgtcattatttaatatgtttatgaattgtttaaatgtttatgtaaatgCTGCGTGACTTTAAAGTGTCCATTACCGAGCCCCATTCAAGCACTGCAGCAGAGAGCGTTGTCATGGAAACGGAGCAACGACACGACACCTGACCGTCAACAGCACTTCTCTCATGCGGCAGTTTTCACtaatttcaggtaagtttagtcgcTAAAATCACGCAAATGTTACATATAACTGTTTCTGACACTTTTCTTACTGGTAATTGACATATTTCTGTTGAACATGTTTTTTATAGAGACTGTTGTGTCTTTGGAAAAAGTCCGTTAGAGTTTTAGCAGAGGTAACGTTAGCATTAGGCTAGCTATTGTTTATAAAAGTGTtg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043583 ear development biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0048568 embryonic organ development biological_process
GO:0048839 inner ear development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0035148 tube formation biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0030684 preribosome cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018316 True 702 lncRNA 0.37 2 29652022 29667209

Neighbor

gene id symbol gene type direction distance location
XLOC_009315 si:ch211-207n23.2 coding downstream 53343 29593547 ~ 29598679 (-)
XLOC_009314 samsn1a coding downstream 65275 29564364 ~ 29586747 (-)
XLOC_009313 hspa13 coding downstream 95265 29549115 ~ 29556757 (-)
XLOC_009312 NA coding downstream 112856 29536484 ~ 29539166 (-)
XLOC_009311 BX324227.2 coding downstream 118000 29527420 ~ 29534022 (-)
XLOC_009318 CR388369.2 coding upstream 2983 29670192 ~ 29670306 (-)
XLOC_009319 NA coding upstream 42090 29709299 ~ 29714528 (-)
XLOC_009320 CR848812.1 coding upstream 103402 29770611 ~ 29820800 (-)
XLOC_009321 CR936972.1 coding upstream 210065 29877274 ~ 29877388 (-)
XLOC_009322 BX322555.5 coding upstream 219214 29886423 ~ 30129765 (-)
XLOC_009303 NA non-coding downstream 642963 29005044 ~ 29009059 (-)
XLOC_009300 NA non-coding downstream 879448 28758455 ~ 28772574 (-)
XLOC_009299 BX950186.1 non-coding downstream 916981 28734927 ~ 28735041 (-)
XLOC_009296 NA non-coding downstream 1055513 28594543 ~ 28596509 (-)

Expression


Co-expression Network