XLOC_009325


Basic Information

Item Value
gene id XLOC_009325
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30316728 ~ 30322214 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018831
agctaaggtactatctccttggcaggaaattcactctggtgaccgaccacgccccgctacaatggatggcgacagcgaagaacaacaacgctcgggtcaccaggtggttcctgtcgctccaggatttcaacttcgacgtacaacatcgagccggggcctcccacggaaacgcagacggactctcacggctctggtcaggatgggcagccgaatccagctcgtgaccgatccaacaccatccctctcaccagtcttcaccttctccccggagcacctgagcacgcacctctaagaagagcactcattcacccctttatcacttgtaaataaaagcaccctccggggcattgtttgtaacttcatctacggtgtttgtgttttccctctgcctcgctacaatgtatacttttttataggAACCCAAAGTTAGTGTTATGAATGTATGCGCCTCTGACATACTCAACTAAAGTTTTCCATCAGCTGAAAAGAGCTGACAAAGAGCTGAGTATGCGAACAATTCTATAGGATTCTACCAAACAAACAGTTTAGACAACTTAAAAAGACAGTTCTTTATCATCTGTTTGTATGCCTGTATAAAAACCGGCCCTGAAGGACTGCCCTTCGAgcaaccagaaaaaaaaacaactcttttgagtttctttacatttagtcatttagcagaagcttttgtccaaagcgactaacgattaaggaggcattcagcaatCCAAGAAGAAtaggcaatacacacaacaagtgctagatacacaaactggtaacagtgctAGATGCTAATACACAAGTAACTTGTTTGtactcagagaatttagtgctagagAGGAGTGGAGTAGGAGTGAAAAAAAGCTAGTGCTTCAACAAGAGGTCTTGGTTTTATTCACTGGTTTAAAGTGCTCTCAGAAGAGATGGATTTTTTAATTGTTGTAATAGTAATTGAAAGATACAAGTGAATCCGCGGCCCAGTTGGaatgggaagatcattccaccagcaTGGAACATTGAATACAAACATGTTGGAAAAG
>TCONS_00018832
atgactccctgcgctaacgcttgtctctctctgtctctcccacagccgaatccagctcgtgaccgatccaacaccatccctctcaccagtcttcaccttctccccggagcacctgagcacgcacctctaagaagagcactcattcacccctttatcacttgcatccgctctctctctctctcccacagccgaatccagctcgtgaccgatccaacaccatccctctcaccagtcttcaccttctccccggagcacctgagcacgcacctctaagaagagcactcattcacccctttatcacttgtaaataaaagcaccctccggggcattgtttgtaacttcatctacggtgtttgtgttttccctctgcctcgctacaatgtatacttttttataggAACCCAAAGTTAGTGTTATGAATGTATGCGCCTCTGACATACTCAACTAAAGTTTTCCATCAGCTGAAAAGAGCTGACAAAGAGCTGAGTATGCGAACAATTCTATAGGATTCTACCAAACAAACAGTTTAGACAACTTAAAAAGACAGTTCTTTATCATCTGTTTGTATGCCTGTATAAAAACCGGCCCTGAAGGACTGCCCTTCGAgcaaccagaaaaaaaaacaactcttttgagtttctttacatttagtcatttagcagaagcttttgtccaaagcgactaacgattaaggaggcattcagcaatCCAAGAAGAAtaggcaatacacacaacaagtgctagatacacaaactggtaacagtgctAGATGCTAATACACAAGTAACTTGTTTGtactcagagaatttagtgctagagAGGAGTGGAGTAGGAGTGAAAAAAAGCTAGTGCTTCAACAAGAGGTCTTGGTTTTATTCACTGGTTTAAAGTGCTCTCAGAAGAGATGGATTTTTTAATTGTTGTAATAGTAATTGAAAGATACAAGTGAATCCGCGGCCCAGTTGGaatgggaagatcattccaccagcaTGGAACATTGAATACAAACATGTTGGAAAAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005840 ribosome cellular_component
GO:0101031 chaperone complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018831 False 1040 lncRNA 0.44 2 30316728 30318051
TCONS_00018832 True 1021 lncRNA 0.43 3 30316728 30322214

Neighbor

gene id symbol gene type direction distance location
XLOC_009324 NA coding downstream 10928 30300780 ~ 30305800 (-)
XLOC_009323 NA coding downstream 158053 30156924 ~ 30158675 (-)
XLOC_009322 BX322555.5 coding downstream 186963 29886423 ~ 30129765 (-)
XLOC_009321 CR936972.1 coding downstream 439340 29877274 ~ 29877388 (-)
XLOC_009320 CR848812.1 coding downstream 495928 29770611 ~ 29820800 (-)
XLOC_009326 NA coding upstream 37116 30359330 ~ 30361414 (-)
XLOC_009327 msi2b coding upstream 102431 30424645 ~ 30832897 (-)
XLOC_009328 akap1b coding upstream 514767 30836981 ~ 30857350 (-)
XLOC_009329 nf1a coding upstream 539433 30861647 ~ 30984804 (-)
XLOC_009330 NA coding upstream 589188 30911402 ~ 30915261 (-)
XLOC_009331 NA non-coding upstream 600936 30923150 ~ 30924089 (-)
XLOC_009333 AL928870.1 non-coding upstream 683767 31005981 ~ 31012712 (-)
XLOC_009342 AL928851.2 non-coding upstream 977349 31299563 ~ 31299678 (-)

Expression


Co-expression Network