XLOC_009336 (lgals9l3)


Basic Information

Item Value
gene id XLOC_009336
gene name lgals9l3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31054200 ~ 31067589 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018354
tgcaatatatctTATATAACTCTTTCTTGAACGGGTTGGTTATGTGAATAAATCTACAATCAAGGATACAGTTTAAACTACGTTTTTGAATAATATATTCTACCCCATACTGTACCTCAGCCTAACTTCCTGTTTTATCGTAAAAGGAGAAAGCGAAACCTACACGTTTTTCTTTGGAAAACGGACATTGGAGGTGGTTCACTGCTGTGTTCAGAAGGAGTTTCTTTAGGCTTTGTCTATCGGTTTTGTCTGCTCACTTGAAACTGCAAGATAAATAACTGGAAGAATGGCTTTTTACCAGCAACAACCTTTCTATAACCCGAGAATTCCATTCAGAGGCCCAATTCAGGGCGGCCTGCAGGACGGGAAAAGCATTATCATAAGTGGACGGGTTTTACCAGGTGCTAACAGGTTTCATGTGAACCTACAGTGTGGTTCTCATTCAGGGGCTAACGTTGCTCTTCACTTTAACCCACGCTATGAAGACACTGACTATGTAGTGCACAACTCATATCTGAACAGGACCTGGGGCTCAGAGGAGCGCAAGTATGAATCTCCCTTTGCTAAAGGTCAAACATTCACCCTGCAGATCCTCGTTGCCCAAGACAGATACAAGATATCTACAAATGGCAGACATTTTATGGATTACAAACATCGGATACCATTCACTCAGGTCGACACAGTCGCAGTGGAGGGAATGGTGGAAGTGAACTCTGTTGCCTTCCAGAATCCTGCGCCCTATTTCCCTCCACAACCAGCCTTTCCAGGTTTCATTCCTCCCCAAGCAGGCTATGCGCCTCAGTATGCTGTACCTCCAGGATGTGGGTTCCCTGCCTTCCCTTCTGCACCAAACTATACCATCCCATACAAAACGGTCATGAATGGGGGACTTCACCCAGGCAAAAACATTGTCATCAATGGAATTGTCAACCCTAATGCTAAAAGAATAACATTCAACCTGTGCTACAGAAGTGGGATTGCGTTTCACTACAATCCCCGTTTTGATGAGAATGTTGTTGTGAGAAACACCAACCAGATGGAGAAATGGGGTGCGGAGGAACGGTTTGGAGGGCTGCCATTTCACAAAGGACAACCTTTTCAGGTCACCATCTCCTGTAATCCCCAACACTACAATGTCTTTGTCAATGGCAAACAAGTACACACTTACAAACATCGCTACACAAAGCTGAACGACATCGACATTTTAGAGATTTGTGGAGATCTGCAGCTGACTTCAGTGCAGGCCTAGCAGAGACGTCTGTTTAAGACGGAAATcatgaataaaagaaaaacaagggAATGCATTACTAATTATTGTGCTCTGCAATGCTAAAATATGACTGAATGTGAACATAAACAGTTTTTTAATGTGGTTTAGCTTCACATATAATATGTTCTGTAGTTGcatgtttttatataactgttGGTAGCCGAGAGAACTCAACGTGCTGCAACATAAGAAAACATCTTTGCCGGTTTGAcaaaaaacatttccattgtggtccgtgctatttgcatttgttgTGAGGATTTTCATCATGTTTTCTatttgtgtttgcattgtgaggatttgcaacacgtgtgcCGATTAAggtgttttctttatttgctaatgttttttgtatttgtgtatttctaAGTTGCAGCAGGTTGAGCTCTCTTGATCATTATATGCATGCTTAAAGCTATAAATCAGCAAATCATGTCATAATCATGGAAATGAAtgtcctattgaccttattctacaatgcagaagtgcgctcattttgtgattgttttagaacttctgtttCTGGTGCCAATGAAATAGAATTGactaataaatggcagaaaaatgTCTACTACTTGttctacaaacaaaaataaaagaatataataaggaaatgtcagtttgcaacatcaagcatcatcacaagctgtttttaataccTTAAAATCACTAAAAGTGAAGGAGACCGGAAGTCTTTAGGCAGATTCCAATGACTGCGTCCACTCAtacatgaagaataaggtcaatattgtttGTCCAATCAAAATGTTTCCTAATCAAAATGGTTTAATGAACCAGGCTTTTCAAGAAGAGTATTGCAgcatttttgctgtttttcagcTCTAAAGCTTAATATTTCAACAGggcttaaatgttttttgttatctGTGATTTATTATATGAATAGTATTCCATGTGTCCAGGTATATTCACCAAGACTCTTTCTAAAGAAATATGCTACTTTCTTTTGGTTATAATAATGTGAAGGCAGTCGAATTGAAGGAACTCATTtgttaaataattctgacttcaactgtagtaaCAGTTTTCTCTCTGTTTATGTTACATTTCATTTATCATTAAGGTGGCAGTAGAGTCATATTACTTTGCCATTTTATTACTGTGAACTTGAAACTGTCAACCTGGTTAATGctcaaaaaaacaataaagtttttaCCATTTAA
>TCONS_00018355
GACATTGGAGGTGGTTCACTGCTGTGTTCAGAAGGAGTTTCTTTAGGCTTTGTCTATCGGTTTTGTCTGCTCACTTGAAACTGCAAGATAAATAACTGGAAGAATGGCTTTTTACCAGCAACAACCTTTCTATAACCCGGTTTCATGTGAACCTACAGTGTGGTTCTCATTCAGGGGCTAACGTTGCTCTTCACTTTAACCCACGCTATGAAGACACTGACTATGTAGTGCACAACTCATATCTGAACAGGACCTGGGGCTCAGAGGAGCGCAAGTATGAATCTCCCTTTGCTAAAGGTCAAACATTCACCCTGCAGATCCTCGTTGCCCAAGACAGATACAAGATATCTACAAATGGCAGACATTTTATGGATTACAAACATCGGATACCATTCACTCAGGTCGACACAGTCGCAGTGGAGGGAATGGTGGAAGTGAACTCTGTTGCCTTCCAGAATCCTGCG

Function

symbol description
lgals9l3 Predicted to enable carbohydrate binding activity and galactoside binding activity. Predicted to be involved in negative regulation of CD4-positive, alpha-beta T cell proliferation; negative regulation of interferon-gamma production; and positive regulation of gene expression. Predicted to be active in cytosol and nucleus. Orthologous to human LGALS9 (galectin 9) and LGALS9C (galectin 9C).

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0032689 negative regulation of interferon-gamma production biological_process
GO:2000562 negative regulation of CD4-positive, alpha-beta T cell proliferation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0016936 galactoside binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-159 Predicted to enable carbohydrate binding activity and galactoside binding activity. Predicted to be involved in negative regulation of CD4-positive, alpha-beta T cell proliferation; negative regulation of interferon-gamma production; and positive regulation of gene expression. Predicted to be active in cytosol and nucleus. Orthologous to human LGALS9 (galectin 9) and LGALS9C (galectin 9C).

Ensembl:

ensembl_id ENSDARG00000041060

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018354 False 2454 mRNA 0.39 11 31054200 31067589
TCONS_00018355 True 464 processed_transcript 0.45 3 31062557 31067406

Neighbor

gene id symbol gene type direction distance location
XLOC_009335 lgals9l1 coding downstream 11017 31032255 ~ 31043183 (-)
XLOC_009334 lgals9l4 coding downstream 27088 31022014 ~ 31027112 (-)
XLOC_009333 AL928870.1 coding downstream 41488 31005981 ~ 31012712 (-)
XLOC_009332 lgals9l6 coding downstream 53894 30987414 ~ 31000306 (-)
XLOC_009331 NA coding downstream 130111 30923150 ~ 30924089 (-)
XLOC_009337 ksr1b coding upstream 3014 31070603 ~ 31147322 (-)
XLOC_009338 wsb1 coding upstream 94194 31161783 ~ 31177324 (-)
XLOC_009339 cuedc1b coding upstream 120427 31188016 ~ 31237473 (-)
XLOC_009340 vezf1b coding upstream 176436 31244025 ~ 31265375 (-)
XLOC_009341 zgc:171927 coding upstream 214631 31282220 ~ 31287970 (-)
XLOC_009330 NA non-coding downstream 138939 30911402 ~ 30915261 (-)
XLOC_009326 NA non-coding downstream 692786 30359330 ~ 30361414 (-)
XLOC_009325 NA non-coding downstream 731986 30316728 ~ 30322214 (-)
XLOC_009342 AL928851.2 non-coding upstream 231974 31299563 ~ 31299678 (-)
XLOC_009344 AL928851.1 non-coding upstream 247620 31315209 ~ 31315548 (-)
XLOC_009348 AL845428.2 non-coding upstream 294198 31361787 ~ 31362141 (-)
XLOC_009360 AL929092.1 non-coding upstream 480145 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 995703 32063292 ~ 32063409 (-)

Expression


Co-expression Network