XLOC_009338 (wsb1)


Basic Information

Item Value
gene id XLOC_009338
gene name wsb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31161783 ~ 31177324 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018360
AATCGTTTGGACGTTTACAGCCATTACAATACACAGAATCCACGCAGAGAGCACCGCTGTTTGAGGAAGCCGGAATATTTACATCCtaatttaagtttaaaattaGTTTCAATTAAACTCGAGTTGGACTTCAAACATTGTACATCTGCCTTTTTAAGCAGTCGCGTTTGTAAATATAGCCAGCGTTGCGTCGACGTGAGACGCTCCGGATTCCCAGGCGTCTGACTGACTAAAGACACGCTCGCGGCATCCTGAGCGTTTTTTCCGTATATATTTGAACGTCTTTATTTCGATAACCAGGGACATTTAGATTTAAGAGACCCGCTTCGATTTAGATGGCAAGCTTCCCAGATTGTGTCAACGAAAATGAAATAGGTAAAGCTAAGTTCATTGGGGAACTCATACCTCCTGTTGCTCCCTTTGACCAAAAGTCTGGACGGGAGACATGGACTGTAGCTTTTGCACCTGATGGTTCCTACTTTGCTTGGTCTCAAGGACATCGGATTGTGAGACTTGTACCATGGAAAAAATGCTTAGCCAGCTTTTCTGTAAGGAAGGAAGATCGGTCGAGTGGTGCAGGTCCTCGAAGACTCTCTCGGCAGAACAGTGAGGGCAGTTTGCTGCCAGGCGAGCCCAGGGAGCACACCATTGACTGTGGCGACATTGTGTGGGGTCTGGCCTTTGGCTCTTCCGTACCTGAGAAGCAAAGTCGCTGTGTTAATATTGAATGGCACCGGTTCAAGTTCGGCCAGGACCAGCTCTTGCTGGCTACAGGCCTCAACAATGGCCGCATCAAAATCTGGGATGTATATACAGGAAAGCTTTTGCTGAACCTGATGGATCACACAGACATTGTGCGAGACCTGACATTTGCCCCGGATGGAAGTTTAGTACTGGTCTCTGCCTCAAGAGACAAAACTCTACGCGTGTGGGACCTCAAAGATGACGGTAACATGGTGAAAGTACTCCGTGGCCATCAAAACTGGGTCTACTGCAGCGCTTTCTCACCTGATTCATCTGTCCTTTGTTCTGTGGGCGCTGGCAAAGCGGTCTTCCTGTGGGACATGGATAAATACACTCTGATCCGTAAGCTGGAGGGCCATCATAATGATGTTGTGTGTTGCGAGTTTTCTCCAGATGGGGCTTTACTGGCCACAGCCTCCTATGACACCCGCGTCATAGTTTGGGACCCTCATACAGCCACAGTTTTACTCGAGCTGGGGCATCTTTTTCCTCCTCCCTCACCCATATTTGCTGGAGGGGCAAATGACCGATGGGTTCGCTCTGTTGCTTTTTGTCACGATGGTCGGCACATTGCCAGCGTCACTGATGACAGGCTGGTGCGTTTCTGGAGTATCGATGAGAAGAGTCCTCAAGCCATCGGCCCCCTCACTAATGGCCTCTGTTGTGCCTTTTCTACTGACGGAAGTGTCTTATCTGCTGGGTCCCGGGATGGCAGTGTGCATTTCTGGGCTTCTCCACGCAGTATCGCCAGCCTTCAGCACCTGTGCCGAATGACCCTGCGACGAGTCATGCCCACTCAGCAGGTTTACACGCTGCCCATTCCCTTTTCCATGCAGGACTACCTGGCCTACAAAACGCTTTAACTAGCAACACAAACCACAGCACTCTCTCAAATGTTTTTTCTGCTCATACAGACCATTAGATGACAGCGAGGTCTGttctttttgtatttatttttttgtattatttggaCAATATTCTTACCTTCAAGCCCATATCAGGTAGCGGCCTTTAGAAAGCCTTAATATATCAGCGGACCACATTTTGATTTgcaattctttcttttttcatctgGCACAACTTGTATAGCACCTTATAGCTAGGTGAATGTGGTGCTTTTAGCTCCTCCACCGAGTTTAAAGCGATGTGATGGGGGAATAATGTCTCCCCAATGTTCTGCAGTGTTTTTCTTTGTCTGTGCTGGCTGTGTGAAGGATTGAAGGGAAGATACAATGTGAACGCATGTATGTGTGAGTGCGTGTGCTAGATTGAAGATAGGTTGGTAGTTCAGGGACACAGGCAGTGCCTCCCCTTTACGTGCCTCTTTAGACAAAATACACTCGCTTAACGGTGCTTCAGTAATGACCTTCTGTTCAACAACACAATCCTAAAACTACAGTAACGCACACGGGCTTACTTTTTTCTTcagaaattgtatattttttacgTGTACAGAGATTTGTAAAGGCATgttattgagtgtgtgtgtgtttatataaatacaaatcttTGTATAAATATTctaagtatatataaatatatatatgtagctTCATTTTTTCCAGCGCTTTCATCCATAGCTGTATTAAAGTTAGCTCTTTTTCTCTTGTGCGATGATGGGTTGTAGCAGAGTTGCACAACAGGTTGCTTTGAGGAGAATCTGGCAACCAGTTCAATGATGTATTCCAGTAGCAAAACCACATTTGATTTCTTATTCCGAACAATTTACCATCAACTTTGCTGTTTGGCACTGTAACAGTGCTTGGGATGCATTGCATTGTCCTAGTGTTtccccacatacacacacagttcacTCTTGTGCACTGTAGATGTTGGCTATGTGCAATTTAACAGAGAGCCAACTTGGTTTCATTTGGGCATGTCTCATCTACCTCTCATTTTGGAGAACTGAAAATATTGATGGTTTATTGGAAGAAAAGCATCCTGATTCTGTTTATTGATCCATTTATGCGTTATATGACCTTTGCCTGTCAGCTTAATGCAATCACATAGTCTTATTAATGTGCACTGTAAAACGTTTCACATCGGTTATGCTTATAAACTCAAGTTTACCAGCTGCCTTGTAAATTGGAGTCAACTCAACTAAGAGAGATTCTTTGTTTTAACTGAACTCACAGCAAAACTTAACATCTTGAGTTGAAACGGAATCTCTCTAAACTGAGTGGACTCACATTTTCAAGGCAGCTGGTGAACTTGAGTTTGTAAGTATAAGCGATGTGAAaggttttacagtgtgggaaTCTGAAGTGGCATGTTGATCTAGTCATGCTGGCAAAGAGTCTCTGCAATAAAAACTAAAAGTGTTCATAAAGCCGATGCCAAAGATCCCCGCTTATTGATGAGATTGGCGCAGTCGGGGTTCTCTTTCCTTCTTCCTCCATTTATGGCGAAAACTTGAAAGTCTTTTTTGTATTCGTAAGTCTGCTGTTATGCTTGAGTGTATGAAGAATGCTTATGTGAAGTAGAAAGATGCGTAGATGCACCAGGATGTTGTGGTAGTGTTTTCAGTCGGGTTGTAGAGATGTTTGGAAAGTAGTCAGTTTGTCCAGCTGTTTCAGGCAGAATACCTTATGCTGTTCCCAATTCGTCAAAAGGAAAAGTCATCTGACAAGaatgtacttttttttctgtCCTCCAAAAGTTggagtttctgtttgtttgtttgtttgtttatttgttttgattgtcagaataaagtattttaattCA
>TCONS_00018361
AAACTGAAAGGGGATACCAGTGGAGTAACATTATGTTACCTTAAGTTACtactttgtaattatttttattttcatattttgtagTAATTATTGGACAAATGTAttgaatgttattttttttcatacatgTACATTTAGTATTTCCATGCACATTTGTAGCTACATTATAATTGTAAAACATATTTCATGTATTAAAACTGCTAGCTGCTCTGTAGAGATTGACATTTGTGCAGTGTTGTGCATCTAAGCCTTGCTGTTACTTTGGCATGTGCTACTTTTTCTgggtttggttgtagtgctaaaaaaTGACACTGAGCACATTTTGATCTTGCTGTTTAATTTGGATTAATTCTTTGTTTGAATTTcttgtctttgtactgtggagaAGCGCAGTAGGCTATAACACATTTACCTCTTGCATTACAGGTCTTCCTGTGGGACATGGATAAATACACTCTGATCCGTAAGCTGGAGGGCCATCATAATGATGTTGTGTGTTGCGAGTTTTCTCCAGATGGGGCTTTACTGGCCACAGCCTCCTATGACACCCGCGTCATAGTTTGGGACCCTCATACAGCCACAGTTTTACTCGAGCTGGGGCATCTTTTTCCTCCTCCCTCACCCATATTTGCTGGAGGGGCAAATGACCGATGGGTTCGCTCTGTTGCTTTTTGTCACGATGGTCGGCACATTGCCAGC

Function

symbol description
wsb1 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Is expressed in several structures, including digestive system; eye; fin; heart; and spleen. Orthologous to human WSB1 (WD repeat and SOCS box containing 1).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-1946 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Is expressed in several structures, including digestive system; eye; fin; heart; and spleen. Orthologous to human WSB1 (WD repeat and SOCS box containing 1).

Ensembl:

ensembl_id ENSDARG00000021343

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018360 False 3474 mRNA 0.44 9 31161783 31177324
TCONS_00018361 True 699 lncRNA 0.40 2 31166695 31167511

Neighbor

gene id symbol gene type direction distance location
XLOC_009337 ksr1b coding downstream 14461 31070603 ~ 31147322 (-)
XLOC_009336 lgals9l3 coding downstream 94194 31054200 ~ 31067589 (-)
XLOC_009335 lgals9l1 coding downstream 118600 31032255 ~ 31043183 (-)
XLOC_009334 lgals9l4 coding downstream 134671 31022014 ~ 31027112 (-)
XLOC_009333 AL928870.1 coding downstream 149071 31005981 ~ 31012712 (-)
XLOC_009339 cuedc1b coding upstream 10692 31188016 ~ 31237473 (-)
XLOC_009340 vezf1b coding upstream 66701 31244025 ~ 31265375 (-)
XLOC_009341 zgc:171927 coding upstream 104896 31282220 ~ 31287970 (-)
XLOC_009342 AL928851.2 coding upstream 122239 31299563 ~ 31299678 (-)
XLOC_009343 or118-1 coding upstream 134392 31311716 ~ 31313932 (-)
XLOC_009331 NA non-coding downstream 237694 30923150 ~ 30924089 (-)
XLOC_009330 NA non-coding downstream 246522 30911402 ~ 30915261 (-)
XLOC_009326 NA non-coding downstream 800369 30359330 ~ 30361414 (-)
XLOC_009325 NA non-coding downstream 839569 30316728 ~ 30322214 (-)
XLOC_009344 AL928851.1 non-coding upstream 137885 31315209 ~ 31315548 (-)
XLOC_009348 AL845428.2 non-coding upstream 184463 31361787 ~ 31362141 (-)
XLOC_009360 AL929092.1 non-coding upstream 370410 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 885968 32063292 ~ 32063409 (-)

Expression


Co-expression Network