XLOC_009340 (vezf1b)


Basic Information

Item Value
gene id XLOC_009340
gene name vezf1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31244025 ~ 31265375 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018368
GAAATGGTTTGGCCCTCGGGGTTACAGGAAGTTGTAGCAGCTGCCATGTTTAGCTGCTTTGTTGTAGATTTCTTGTAGGTTTCCTGCAGATTTTTTTAAGTGTTGCAATGGAGCCGAGCTGgagttcatttttatttcagCAGGCCAATGAAGCCCTCCACCACCAGCATCAGGTCAATCAGAACAGCCTGCTGCCTCTGCTCAACTCTGAGCCGCAGGATCAAAAGCCTGTTCTCCCCATCCCGCTGGACCAGAAGCCCCCAATCATTTCATCCGACCTCCTCAAAGACAACTTGGGTGGCGGAACGGGTGGAGGAGGAGGCGGCGGAGGTGGGGGTCCGGTGGTCATAAAAAAAGAGCCCAAATCAAAAACACCCTTCATATGCAGCTACTGCAGCAAGGCCTTTCGGGACAGTTACCACCTCCGACGGCACGAGTCTTGTCATACAGGCATTAAGATGGTGTCCCGGCCCAAAAAGACCACCACAGCGCCCACCATGGTGCCTCTCATTTCCACTGTGCCACGCGACAACAACGGAAACCCATCTTATGTGTCAACAGTGGCGGGCATCCTCACCACAGCAACCACCTCAGCATCCACAGCCGCAGGCATCATGTCAGTTCTGCCCCAACAGCAGCCAACCGTGCCCAAAAAACCCCCCAAACCGGTAAAGAAGAACCACGGCTGTGAGATGTGCGGCAAGGCCTTCCGGGATGTCTACCACCTCAACCGGCACAAGCTCTCGCACTCGGACGAGAAGCCCTTTGAGTGCCCTATATGCCACCAGCGCTTCAAGAGGAAGGACCGCATGACGTACCATGTGCGCTCGCATGATGGCGGCGTGCACAAGCCCTACATCTGCTCCGTTTGTGGGAAGGGCTTCTCTAGGCCGGATCATCTTAGCTGTCATGTCAAACATGTACACTCCACAGAACGACCCTTTAAATGCCAAGTAACGGCCTGCACATCTGCCTTCGCCACCAAAGACCGTCTGCGTTCACACATGATACGACATGAAGGCAAAGTCACCTGCAACATCTGTGGGAAGATGCTGAGCGCCGCCTACATCACCAGCCACCTCAAGACCCATGGCCAGACCGGCTTCACCTCGACCTGTAACAAAGACTCTAACAACGTGTGCAACTCTGCCTCAGCCACACCGGTCACTGCCTCAACCGCGTCCAACACTACGGCCATGATCCGCGGCAGCGCCAGCAACCCCGTCACCATCGCCGCCCAGATGAACATCACCACCAACACAGTCAACATCACGTCCCCTGTCAGCCTTCAACACCCGGTCACCATCACTGCCCCCGTCAACATCGCCTCAGTCAACATCCCGGCCTCGGCACCCATGAACATCGCCCATCCTGTCGCCATCACCTCGCCCATGTCAATGAACATCACCGGGCCGCTCAACATCGCCATGAGGCCCATGGAAAGCATGCCTTTCCTCTCGCAGGTCTTGCCTTCCACTCCTCCCTGGTAGAGCCCAAATGTCCTATCCCGGGCCATATTAGTCTTCCTCTCCTGCTGCGAGGGGTGAAAAAGGCGACTTTAGGAAAATGGCGGTCTGCAGCGAGGAATCATGCGGATTATAGCTGGCACTTTGCGTCTCCAGATTGTTTAGAGTTTAGTTGacggacagaaaaaaaaaaaa

Function

symbol description
vezf1b Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human VEZF1 (vascular endothelial zinc finger 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-121 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human VEZF1 (vascular endothelial zinc finger 1).

Ensembl:

ensembl_id ENSDARG00000061030

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018368 True 1661 mRNA 0.55 5 31244025 31265375

Neighbor

gene id symbol gene type direction distance location
XLOC_009339 cuedc1b coding downstream 6552 31188016 ~ 31237473 (-)
XLOC_009338 wsb1 coding downstream 66701 31161783 ~ 31177324 (-)
XLOC_009337 ksr1b coding downstream 96703 31070603 ~ 31147322 (-)
XLOC_009336 lgals9l3 coding downstream 176436 31054200 ~ 31067589 (-)
XLOC_009335 lgals9l1 coding downstream 200842 31032255 ~ 31043183 (-)
XLOC_009341 zgc:171927 coding upstream 16845 31282220 ~ 31287970 (-)
XLOC_009342 AL928851.2 coding upstream 34188 31299563 ~ 31299678 (-)
XLOC_009343 or118-1 coding upstream 46341 31311716 ~ 31313932 (-)
XLOC_009344 AL928851.1 coding upstream 49834 31315209 ~ 31315548 (-)
XLOC_009345 or118-3 coding upstream 51983 31317358 ~ 31319276 (-)
XLOC_009333 AL928870.1 non-coding downstream 231313 31005981 ~ 31012712 (-)
XLOC_009331 NA non-coding downstream 319936 30923150 ~ 30924089 (-)
XLOC_009330 NA non-coding downstream 328764 30911402 ~ 30915261 (-)
XLOC_009326 NA non-coding downstream 882611 30359330 ~ 30361414 (-)
XLOC_009325 NA non-coding downstream 921811 30316728 ~ 30322214 (-)
XLOC_009348 AL845428.2 non-coding upstream 96412 31361787 ~ 31362141 (-)
XLOC_009360 AL929092.1 non-coding upstream 282359 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 797917 32063292 ~ 32063409 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000093_01189004_01193556 NA coding CI01000093 null 1188547 ~ 1193673 (-)
bowfin (Amia calva) AMCG00005560 LOC106568075,LOC104946632,LOC106603282 misc CM030142.1 CM030142.1 3850136 ~ 3869209 (-)