Fish Transcriptome and Expression Database

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model fish

XLOC_009342 (AL928851.2)

Basic Information

Item	Value
gene id	XLOC_009342
gene name	AL928851.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	31299563 ~ 31299678 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018370
gccagcagctagctctctgcaactctcacatggtcgccctcCGAAGCTAAGGAGGGCTGTGcacggtcagtacctggatggaagaccacatgggaaagctagggttactgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108180

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00018370	True	116	rRNA	0.57	1	31299563	31299678

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_009341	zgc:171927	coding	downstream	11593	31282220 ~ 31287970 (-)
XLOC_009340	vezf1b	coding	downstream	34188	31244025 ~ 31265375 (-)
XLOC_009339	cuedc1b	coding	downstream	62090	31188016 ~ 31237473 (-)
XLOC_009338	wsb1	coding	downstream	122239	31161783 ~ 31177324 (-)
XLOC_009337	ksr1b	coding	downstream	152241	31070603 ~ 31147322 (-)
XLOC_009343	or118-1	coding	upstream	12038	31311716 ~ 31313932 (-)
XLOC_009344	AL928851.1	coding	upstream	15531	31315209 ~ 31315548 (-)
XLOC_009345	or118-3	coding	upstream	17680	31317358 ~ 31319276 (-)
XLOC_009346	or118-2	coding	upstream	20339	31320017 ~ 31323932 (-)
XLOC_009347	or111-2	coding	upstream	31678	31331356 ~ 31366742 (-)
XLOC_009333	AL928870.1	non-coding	downstream	286851	31005981 ~ 31012712 (-)
XLOC_009331	NA	non-coding	downstream	375474	30923150 ~ 30924089 (-)
XLOC_009330	NA	non-coding	downstream	384302	30911402 ~ 30915261 (-)
XLOC_009326	NA	non-coding	downstream	938149	30359330 ~ 30361414 (-)
XLOC_009325	NA	non-coding	downstream	977349	30316728 ~ 30322214 (-)
XLOC_009348	AL845428.2	non-coding	upstream	62109	31361787 ~ 31362141 (-)
XLOC_009360	AL929092.1	non-coding	upstream	248056	31547734 ~ 31547852 (-)
XLOC_009362	CR388091.1	non-coding	upstream	763614	32063292 ~ 32063409 (-)
XLOC_009364	NA	non-coding	upstream	1113636	32413314 ~ 32433673 (-)

Expression

Co-expression Network