XLOC_009343 (or118-1)


Basic Information

Item Value
gene id XLOC_009343
gene name or118-1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31311716 ~ 31313932 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018371
CAGGATGGTAACTTAAGATGACTAAATAATAAATGTGCCGCTTTTGAAGCAGATACAGTAATCTGAACAGCTTGATTTCTTGTGAATGCAGTAAAACTTGATCTGAAAACTAGTATAGATTATGCACAAAAGGCCTCATTGtacaaatcacaaaaaaactGTTGATTGGTCATAAGCAAGTAAATAGCAAGCTATTATTGTATAATGTGATGTGAACGGCTTTGGATATTCTTCATTTAATATTAACATGATGTTCTTTAAAATTGGTTACTTTTTTCAGGTCGTAGCCTGAGGAAGATGATTCTTACTGGATTTGGCTAAATGAAAAGATGAAACATATATATGTTGGACACCAAATTCTGAAAAGTTCTGGCAAGATTTCAGTGTGCTACTTTTAATATCTGTAGCTTATTCATATTTATAGCAATAATAAATTGTTTATGGTGGTTTTGTATTGGTAGTAAGTACTGAGAACATTCACCATGTATCCAAATGAATCTGTCTTCTCACTGGTGTTGACGTTGCACTCTTTGGAACTGCCTGAGGCGAACATTTATCCTGCATTCATATTTGGTTTAacaacatacttgtttatcttaCTTTGCAATTTAACAATTATCATCACCATTTGCTTGAACAGAAATCTTCATAAACCAATGTACATTCTGCTGCTCAACCTGCCGATCAATGATGTTTTGGGGGCTACATGTCTTTTTCCTCAGCTGCTGTACAGCATCTGGTCTCAGGACAGGTCTATATCCTACTCTGCATGTTTGCTTCAAGGCTTTTTTGTACACCTGAATGGTGGAGCATCTTATCTTATTCTTACCGCTATGGCTTATGACAGATATATCACAATCTGCTGCCCGTTGAGATATGGAGCTATTATGACCACCAATAACTTGTTGAGAATCATAATTGGTATGTGGCTTTTTAATGTTGTTGCAATAACCGTAATTTGTGTTCTACTGTTGCCTTACAGGATTTGTCAGACACACATGACTGATCTGGTCTGTTATAAGACACCATTAATGAAACTCTTATGTGACGGCATAGAGGTGAACAATATCTACGGTCTGTGTTGCATAATTTTTTACCACGGCCTTGCTCTCTCTGTTGTGGctttcacatatattcatatattaatcaCTTGTGTTACTAATAAGCAGTCAGATGCAAGAGTTAAAGCTCTTCAGACATGTGGGACTCATTTGGTGGTCTTCCTGTTGTTAGAAATCAACACTCTTTTTCCTCTTCTTGCACATCGATCTGAGATTATTCCTGCTTTCCTACGCAGGGTGTTTTCTATATCCAATTTTATCTTCCCTCCTCTTGTGAATCCACTTATTTATGGGTTTAAAACTAAAGAGATCAGGCTGAAagtttttaacagttttaaaagCAAGATAAACAGTATCTGATGTAAACCTGGTCTTTGTATGAAAAGCTgttagttttcattcatttatacattcattttctttcgacttagtcccttacttatcagggagtaccacagcggaatgcaccgccaactgTTCCAGGATTTGTTTTCGTGCAGcatatgccctttcagctgcaacccaatactgggaaacaccactacacattcattcacacatgcattcatacacaacggacaatttagttcattcaattcacctatagtgcatgtatttggactgtggaggaaatcagagcacctggagaaaaaccacaccaacacagaggtgaacatttaattcaattcagctttatttgtatagcgcttttacaatgtagattgtgtcaaagcagcttcacatgaatGGTCATAATTGGAAcagagttcagtttagctcagttcagtgtggtttaaaatcattactgagagtccaacactgaagagcaaattcatgcaaactcctcacagaaatgccaactggcctggccgggactcgaatcagggGCCGTCTTGTTATGTGGCGACAATGCTAATCAATGAGCCAGTGTGTCACCCCTGCTATTTTTTAAGCGTATTTTTTTACGTATTATCTTTTAGATCATGTTATTTGATAAATGTcattaaagaaaatatatttttactggGATTTCTTTGTGAAAGTGTCCAAAAGTaggcaaattattaaataaaaatggcaCATGATGATGACCTGTATGGATCAAAATTAATgactctttttttatatatttattgggttttgtttGAACTAAAga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-80 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OR4D1 (olfactory receptor family 4 subfamily D member 1).

Ensembl:

ensembl_id ENSDARG00000054720

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018371 True 2217 mRNA 0.36 1 31311716 31313932

Neighbor

gene id symbol gene type direction distance location
XLOC_009342 AL928851.2 coding downstream 12038 31299563 ~ 31299678 (-)
XLOC_009341 zgc:171927 coding downstream 23746 31282220 ~ 31287970 (-)
XLOC_009340 vezf1b coding downstream 46341 31244025 ~ 31265375 (-)
XLOC_009339 cuedc1b coding downstream 74243 31188016 ~ 31237473 (-)
XLOC_009338 wsb1 coding downstream 134392 31161783 ~ 31177324 (-)
XLOC_009344 AL928851.1 coding upstream 1277 31315209 ~ 31315548 (-)
XLOC_009345 or118-3 coding upstream 3426 31317358 ~ 31319276 (-)
XLOC_009346 or118-2 coding upstream 6085 31320017 ~ 31323932 (-)
XLOC_009347 or111-2 coding upstream 17424 31331356 ~ 31366742 (-)
XLOC_009348 AL845428.2 coding upstream 47855 31361787 ~ 31362141 (-)
XLOC_009333 AL928870.1 non-coding downstream 299004 31005981 ~ 31012712 (-)
XLOC_009331 NA non-coding downstream 387627 30923150 ~ 30924089 (-)
XLOC_009330 NA non-coding downstream 396455 30911402 ~ 30915261 (-)
XLOC_009326 NA non-coding downstream 950302 30359330 ~ 30361414 (-)
XLOC_009360 AL929092.1 non-coding upstream 233802 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 749360 32063292 ~ 32063409 (-)
XLOC_009364 NA non-coding upstream 1099382 32413314 ~ 32433673 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location