XLOC_009345 (or118-3)


Basic Information

Item Value
gene id XLOC_009345
gene name or118-3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31317358 ~ 31319276 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018373
ATAAAGCACTTCATCTAATACAGCTATGGTATATACACCATTATAAATGAGCAAACATGCAACTTCAAATCTCTCAAATTATTCAATTAGAAAATTATTCAAAACTAACTAATCTgctaaactactgaaatgtctGTCTTGTGTATTGTTTCtgttatttctgtgttgttttttgtCATGGTGAATTCAATGTGCTATTAATAAATTGGCTTTTTTTCCAGGTGATGCTGAATATATCAGAATTAAAAGGATGATTTGGTCAATTTGATTTAAATCATTCATCTTCTGTGACGTTAAAAAGACGTTAGTGGCTTGCTGGGTTTGCTGGGCTTAATGCTTTATCAGTAGCTGCAGCATGTATCCTAATGAATCTGTCCTTTCAGTGGTTTTGACTTTACACTCTTTGGAATTGCCTCAGATGAGCATTTATCCTGTATTAACATTTGGAATAATGACATACTTGATTGTTTTACTTTGCAATTTAACAATTATCGTCACTATTTGCTTGAACAGAAATCTTCACAAACCAATGTACATACTGCTGCTCAACCTGCCAATCAATGACACAATGGGCTCCACAAGCCTTTTTCCTCATCTGCTGTACAGCATCTGGTCTCAGGACAGGTCAATAACTTACTCGGCATGCTTGACTCAAGGcttttttatacacttttatggTGGTGCATCTCACGTAATTCTTATGGTCATGGCATTTGACAGGTATATCGCAATCTGCTTACCACTAAGATATGGAGCTATTATGACTCCAAGCAACCTAATGAGAATCATAAGTGTGATGTGGTTCATTCATTTTGTTATCATATTTGTGCTTTTCTGTCTTCTAATGCCTCACAGGATTTGTCAGACGTATATGGCAGATCTTATCTGTTATAACCCCTCTTTAATGAAGATCATGTGTGAAGACACAACAGTGAACAATATGTATggcttgtttattttatctttataccACAGCCTGCCGCTTTCTGTTGTGGCTTTCACATATATCCATATATTAGTCACTTGTGTTACTAATAGGCAGTCTGATGCAAAGATGAAGGCTCTTCAGACATGTGGGACCCACTTGGTCGTCTTTCTGTTCTTGGAGTTCAACACTCTTTTTCCTCTTATTGCACATCGGGCTGAAAGTATTCCAGCTCATCTACGCAGAGTGTTTTCTATATCTGTCGTTATATTTCCTCCCATTGTAAATCCACTTATTTATGGGTTTAAAACTAAAGAAATTAGGCAGAAAATTGAAAACTTTTATAAGAGAAAGATTATCAGAGTGCATTGAACAgcatatgtttataaatatatattgtgcatTATTTGTCTGACTTTAATCTATCATAAAGTTTATATTTAGCAAcgtacaagaaaaaaaatgttttgttgcacatttagtatgatttatgcGAAAGTTATTTTGCACTAAatgaatttcattattattaaataatttagttttttattataataaatacgaCTTAGATGACTTCAGTCTAATCATTCATACTCAGCAGCCACTTTTTAGGTCCACCTTCCTAGTAATGAGTCAGACCTGCCTTCAGAACTGAGTGGCTTGATCAAATAAATAGAGTAtcaattatttttgtaatatagacttgttattgtacattatttgataaaatcattcTTAACATGCTCTAATTTCAACATAGGTTCATTGGAAATGTATGCTTCAGCCTACAGTTTTGTGATTAGactgaaataaatacttaaacatgTTTGACTGGAGTTTTTATAGGTCAAATGAACACTACAGGGGGGTCTAACACCAACAGCTTTTGTCtcttttgtatgatttttgctaggaaatattatataaatattgtataataaataaaggattattttaaaGTAGTTCTTTTTACAACAGCAAATAAATACCACTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-82 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human OR4D1 (olfactory receptor family 4 subfamily D member 1).

Ensembl:

ensembl_id ENSDARG00000054719

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018373 True 1919 mRNA 0.33 1 31317358 31319276

Neighbor

gene id symbol gene type direction distance location
XLOC_009344 AL928851.1 coding downstream 1810 31315209 ~ 31315548 (-)
XLOC_009343 or118-1 coding downstream 3426 31311716 ~ 31313932 (-)
XLOC_009342 AL928851.2 coding downstream 17680 31299563 ~ 31299678 (-)
XLOC_009341 zgc:171927 coding downstream 29388 31282220 ~ 31287970 (-)
XLOC_009340 vezf1b coding downstream 51983 31244025 ~ 31265375 (-)
XLOC_009346 or118-2 coding upstream 741 31320017 ~ 31323932 (-)
XLOC_009347 or111-2 coding upstream 12080 31331356 ~ 31366742 (-)
XLOC_009348 AL845428.2 coding upstream 42511 31361787 ~ 31362141 (-)
XLOC_009349 or111-4 coding upstream 51914 31371190 ~ 31372486 (-)
XLOC_009350 or111-5 coding upstream 62739 31382015 ~ 31383588 (-)
XLOC_009333 AL928870.1 non-coding downstream 304646 31005981 ~ 31012712 (-)
XLOC_009331 NA non-coding downstream 393269 30923150 ~ 30924089 (-)
XLOC_009330 NA non-coding downstream 402097 30911402 ~ 30915261 (-)
XLOC_009360 AL929092.1 non-coding upstream 228458 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 744016 32063292 ~ 32063409 (-)
XLOC_009364 NA non-coding upstream 1094038 32413314 ~ 32433673 (-)
XLOC_009366 CR855389.2 non-coding upstream 1314014 32633290 ~ 32635777 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000093_01249925_01250866 OR118-3 coding CI01000093 null 1249904 ~ 1251767 (-)