XLOC_009356 (or111-11)


Basic Information

Item Value
gene id XLOC_009356
gene name or111-11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31417886 ~ 31419805 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018388
ATAGATATTCATTGAACTGACTGAATGTGCAATAACATATCTTTATATTTGCAGAGTGCAGACAAGCAGTCATTGTTTGCTATGGCtttgtagttttgtgtttatACACAAGACTGATTATATTGTGGAGATTTCTATGCATATACTcttgGGCAAAACACCAAACGCTAAGCTGCCATGAGTTCTGACAGTGCAAGTTTCTCATCGAATATCTCCATTGTTCATCCTGAATACTTTTTCATCACTGGGCTTTCAGGTACAGAATACAGCAATTATTACTACATCTTCTTGTTTTTCCTTTATATTGTTGCTGTAATCGGAAACTTTATAGTTCTTCTCATTATAGCTCTTGAACGCAGTCTGCACAGTCCAAAGTACATTGCTGTGTTTAACTTGGCCTTGGCTGATATTGGTGAAATGAATGCACTGGTTCCTAACATGataaaaatgtttctgtttgaGTCCCAGTACATCTCCTATAATGCGTGTATggtaaacatgttttttgttCACTTCTTTACTACCATGCAGAGTTTCACTCTTGTTGTTATGTCTTACGATCGCTTTGTAGCTATTTGCTTGCCATTGAGATATCATGCTATTGTCAACAACACAGTCATATCTGTAGTGTTTTTAGTTTTATGGGCGTTTAATGTTTTTGTGCTTCTGGTTGTGGTGGGTATGATCACTCGACTGTCAATCTGCAAAAGCAATGTGATACTGAGTTATTATGGTGATCATGGACCAGTGTATAAGTTGGCATGTAATGATAACAGCATCAATTCTTTTTTGGGAAAACTCAGCACAGCTTTATATCTAGTAGCACCACTGATCATCATATTCCTGTCATATGTGGGTGTTTTTCTTGCTTTAAGTAAAATTACAACTTGGGAAGGACGTTTAAAAGCTCTGAAAACCTGTGTTGCACATTTGTTGTTGGCGGGATCTTTTTTCGTTCCTATATTCAGCATATACATTGCTTCAATCATGAATTCCCTCACTCCTAATGCAAGGGTCCTCAGCACATCCCTGTCATATGTGCTTCCACCAACTCTAAACCCTATACTTTACGTTTTAAACACAGCTGAAatcaaacaattaattaaaaaaattattaaaaacagatctACCAAAACTGTGCATGTTGCAAGCTAACTTGTtttctttattaatgtttttagaaTGTACTAGATGTTTTCACATAAATATATGGAGACAAATAATTTAGAAATAGATTAAGTGTACTGggttatatataatgtaaaattcTCAGTTCAACATGTGTTTAAGGATAAGTTTATGTATTAGAGCTAATTTTAGGAGCCTTTATTTCACTTTTGTTAAACATAATACAAAGCAAACACAatgtaaacacaataaaaaagcaaaagaTATGTCATGTTTCTGCATTTTACTCAAATAACATGTCTAAATCCCTGCCTTATTGATTGCATTGGGTCTGTATTGGATTTATAatcgaaacaaaaataaaacaaggtGGAATTGTATTGATGAAGTGAATAATATATTCCTAAGAGTTGACTAGACATGCACAATTCTGTCTTTATTGTGTTCTGTATTATAATATAGTACTGTATGATATAGCAAGTTGTACATGCTGACATTCAACATATCATTTTCACTAGTTTATTTATACATGAATAAAACAATGTGTTGCAGATAATATATACACAATGACAATGAGCTGGGTGAACTCCTGTGAGAGACACAACTTATAGCTACTGTGACATTTGTACTGGCCTTTTCTTAAGATGATTGTCTGTCccaataaatgtattataaatgtt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010308-10 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in peripheral olfactory organ.

Ensembl:

ensembl_id ENSDARG00000041019

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018388 True 1808 mRNA 0.34 2 31417886 31419805

Neighbor

gene id symbol gene type direction distance location
XLOC_009355 or111-10 coding downstream 3888 31412595 ~ 31413998 (-)
XLOC_009354 or111-9 coding downstream 8873 31407840 ~ 31409013 (-)
XLOC_009353 or111-8 coding downstream 11793 31404806 ~ 31406093 (-)
XLOC_009352 or111-7 coding downstream 16525 31399923 ~ 31401361 (-)
XLOC_009351 or111-6 coding downstream 26901 31389403 ~ 31390985 (-)
XLOC_009357 si:dkey-1m11.6 coding upstream 66072 31485877 ~ 31498123 (-)
XLOC_009358 si:dkey-1m11.5 coding upstream 80980 31500785 ~ 31508221 (-)
XLOC_009359 hmgb1b coding upstream 93260 31513065 ~ 31516583 (-)
XLOC_009360 AL929092.1 coding upstream 127929 31547734 ~ 31547852 (-)
XLOC_009361 hsph1 coding upstream 144332 31564137 ~ 31588162 (-)
XLOC_009348 AL845428.2 non-coding downstream 55745 31361787 ~ 31362141 (-)
XLOC_009344 AL928851.1 non-coding downstream 102338 31315209 ~ 31315548 (-)
XLOC_009342 AL928851.2 non-coding downstream 118208 31299563 ~ 31299678 (-)
XLOC_009333 AL928870.1 non-coding downstream 405174 31005981 ~ 31012712 (-)
XLOC_009331 NA non-coding downstream 493797 30923150 ~ 30924089 (-)
XLOC_009362 CR388091.1 non-coding upstream 643487 32063292 ~ 32063409 (-)
XLOC_009364 NA non-coding upstream 993509 32413314 ~ 32433673 (-)
XLOC_009366 CR855389.2 non-coding upstream 1213485 32633290 ~ 32635777 (-)
XLOC_009367 NA non-coding upstream 1393931 32813736 ~ 32817995 (-)

Expression


Co-expression Network