CI01000046_00100813_00103411 (LERL1, LEPROTL1.L, LEPROTL1)


Basic Information

Item Value
gene id CI01000046_00100813_00103411
gene name LERL1, LEPROTL1.L, LEPROTL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 100568 ~ 104084 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00100813_00103411.mRNA
GTTTAAAAATATTCTCATGTAATAAGTATATCTGCCAGTAATTTTATTGTAATATATACTGTTTGTTACACTTGTTCGTCTAATGTTTGATTTGTTGTGTTGTTTTGCGGTCACCGGAAGTGGTCTAGTTCGGCGCATGCGCAGTGTGGAGGGCAGCGCTAGCCTTGCAGAGGATCATAATCGCGAAGAGTTTCTTTAGCTTTAATTATTCAAACTGTTAATTAGTGTGTTTATGAATCTACGCAATGGCGGGAATTAAAGCTCTCATCAGTCTGTCGTTTGGAGGAGCGATCGGCCTGATGTTCCTCATGCTGGGCTGCGCTCTGCCCGTCTATAATAAGTACTGGCCTCTGTTCCTGCTCTTCTTCTACATCCTGTCACCCATCCCGTACTGCATCTCTCGACGCGTGGTGGATGACACTGACTCGGCTAGTAATGCCTGCAAAGAGCTGGCCATATTCCTGACCACGGGGATCGTCGTGTCGGCCTTCGGCCTGCCCGTCATATTCGCCCGCGCCGCTGTGATCGAGTGGGGAGCCTGTGCACTCGTCCTGACGGGAAACATCGTCATCTTCGCCACCATCCTGGGTTTCTTCCTGGTCTTCGGGTCGAACGATGACTTCAGTTGGCAGCAGTGGTGAAGCGCGGCGCCGCGTCTGGACTGTTTCTCCTCGATGCAGCGTCACTATGATACTGTTACAGCAGTTTGTTTTACTCTGACATTATCGTTTTTATTTATAACTGCCGCCCATTGATAGATGCAAGAAATCAGTGCAATAATTTTGTTTAATTTTAGATCTGTCTGACATCAGATTGTTTTATTGTTTTTTCATTTCATGCACGACTGAATTCAGGTGGTCAAACAAACACTGGTGACGTCAGATTGTTTCGTCCAAGCATTTCATTGTACGTACGCACAGCTTCTTTCTGAAACCGGAAACATTTCAGCGTCTCATCCGTCTTCAGCTTTATGACTCTTATGTCTTTTCTGTTACCAGCTTTGCTTTTTTTTTATTCAGAACTTATTTATTTGTTCCTGTCTCTCTTGTTTTCTCTTTGATGGCGCATTAAACATGAGATTGTAGAATGAAGCTCATTATGTTCATGTTGATTTGAATGATTCTGTTAGTTTGTTTTTATTGCATAGTGATGCTTTTGGCATTGTGAGATTTCCAGATTTCCCAGACACGTTTCTTTAAAAAACAAAAACAAAAAAATCAGTAACTTTATCAGCTAACTATGAAATTGAGATCACGTTTGATTTAAAAGCATGTAGACTAGCTTATATTCATCATTTAAGGTGTAAATTCAAAA

Function

symbol description
leprotl1 Enables identical protein binding activity. Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and negative regulation of growth hormone receptor signaling pathway. Predicted to be integral component of membrane. Predicted to be active in endosome.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00100813_00103411.mRNA True 1314 mRNA 0.42 4 100568 104084

Neighbor

gene id symbol gene type direction distance location
CI01000046_00107578_00163060 NA coding downstream 25 104109 ~ 163135 (+)
CI01000046_00436111_00443677 NUDT6 coding downstream 332027 436111 ~ 446757 (+)
CI01000046_00477221_00481241 NA coding downstream 373137 477221 ~ 481243 (+)
CI01000046_00492034_00493262 KIAA0141 coding downstream 387950 492034 ~ 493338 (+)
CI01000046_00494421_00496860 KIAA0141 coding downstream 390337 494421 ~ 496958 (+)
G194579 NA non-coding upstream 26567 72849 ~ 74001 (+)
G194574 NA non-coding upstream 36826 63325 ~ 63742 (+)
G194558 NA non-coding upstream 61273 39050 ~ 39295 (+)
G194556 NA non-coding upstream 62994 37363 ~ 37574 (+)
G194555 NA non-coding upstream 63952 33289 ~ 36616 (+)
G194599 NA non-coding downstream 43659 147743 ~ 260136 (+)
G194644 NA non-coding downstream 130878 234962 ~ 272666 (+)
G194681 NA non-coding downstream 219851 323935 ~ 324144 (+)
G194682 NA non-coding downstream 221887 325971 ~ 326182 (+)
G194684 NA non-coding downstream 223148 327232 ~ 327545 (+)
G194721 NA other downstream 353924 458008 ~ 460345 (+)
G195003 NA other downstream 1057073 1161157 ~ 1161690 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 1435410 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 1768711 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 2335833 2442395 ~ 2457280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038438 LEPROTL1 coding NW_003337086.1 KN149978.1 12292 ~ 15439 (-)