CI01000046_00399845_00400761


Basic Information

Item Value
gene id CI01000046_00399845_00400761
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 399189 ~ 400812 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00399845_00400761.mRNA
ATGCTGAGAATGACCCGTCTCTCTCTCTCTCTCTCTCTCTCAGGGTGTCAGATGAACATTGCATCTGTTCTGTTGTCTGGAGTTGCTGATCGTGTCTTATGGATCGCCACGCACGAGAGGACTCACGAGGTGCTCCTGGTGAACGTGAACAACAACTACGAACACCGGACCGCCCGTCCGCCGGCGCTCAGCCGGTCCACCAGCACGGGGAGCGCCGGGAGCAACAGCAGCACGTCTTCGGAGCAGGGCTTGCTGCCGAATTACCGCAACAGAGCCGTACGGACTCAGCCGAGCGCATCCTCGCATCCGTTCCTCCCACCGGACGCTCCGCTCAAACAGACCCCGGTGGAAAAGCTGGACTCGGCGCATCTGTACATCTGTGAGAGCTGCGGGAAATGTAAGTGCAGCGAGTGTACGGCGCCACGGCCGCTTCCGGCGCGCCTCGCCTGCAACGGACAGTGTCTGTGTTCGGCCGAGAGCGTGGTCGAGCACGGGACGTGCATGTGTTTGGTGAAGGGCATTTTCTACCACTGTTCCAACGACGACGACGACGTCGGCGACCCCTGTGCCGACCGGCCGTGTTCGCTGTCGCACCCGCAGTGCTGCTCGCGCTTCCTGTGCATGGGCCTCATGTCGGCGCTGTTCCCGTGTCTGCTCTGTTACCTGCCCGCCAAGGCCTGCGTGAAAGCGTGCAACTCGTGCCACGACCGCGTGAACCGGCCCGGCTGCCGCTGCAAGAACTCCAACACCGTTTACTGCAAGCTGCAGAACTGGAACCAAACGCCCGGACACGCGCCGGGAAAACCGTCCTGAGGCCCTCATATCGAGAAATATGATTTTATTAATAGCTGGGGAAGCTGTATCGCTGCTGCAGGATGTGGGAACAGAAAAGGGGGAGGGGTTATGTTAATGAGCACATATAAGCTCCGCCCCTCCCGGAGGAATGTGAAAACCACTTGTTTCGTTGCCGTTTTCAGCAGGTTGCCTTACCCGACTGTGTACAGCTACTATCTAACACCAGAGAGTTCAGCGATGGTGCTTTGGAAACCAAACCTGTGAAGGACTTTATTTGCCGGGCCGGACCGTAAAAATGTAGCCGTTACCGGCTCTCCGTAGCAGGCGCGGTTGTTATGAAACGGTTTCTACGCATCTGTTTTTGTTCTCATTTTGTTGATGTAAAGAGGAATTTACGGCTATTTTTTAAAAGAAAATGTTAAAACTGTTTAACTTTTTTCGTTGTTGTTGTTGTAAAAAAAAAAATATTTATTATGTGAAGCTCTATTATTTTATGATATTTATTGCAAAGGACAGATTTACTCATGTCTGAATATAACAAAATATCAACACTTACTGCAACATGAAAGAATGGAGAAACAGATGGAAACATGTTAACTTTAATGCAAAAATATACAAATTAATGCAAAACGCTCTTGTCTAGTGTCTCATTTCATTCGGAGAACAAGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00399845_00400761.mRNA True 1469 mRNA 0.51 2 399189 400812

Neighbor

gene id symbol gene type direction distance location
CI01000046_00332581_00354353 ANKRD50 coding downstream 44836 332581 ~ 354353 (-)
CI01000046_00224464_00306703 FAT4 coding downstream 92486 224445 ~ 306703 (-)
CI01000046_00085822_00091135 AURKB coding downstream 308054 85184 ~ 91135 (-)
CI01000046_00063416_00065082 NA coding downstream 334107 63153 ~ 65082 (-)
CI01000046_00055148_00059869 FNTA coding downstream 339320 54815 ~ 59869 (-)
CI01000046_00428495_00432835 SPATA5 coding upstream 26807 427619 ~ 432835 (-)
CI01000046_00446100_00446285 FGF2 coding upstream 44759 445571 ~ 446285 (-)
CI01000046_00461851_00464237 NA coding upstream 60903 461715 ~ 464237 (-)
CI01000046_00527690_00528880 NA coding upstream 126700 527512 ~ 528880 (-)
CI01000046_00557959_00566058 CHRNA9 coding upstream 154727 555539 ~ 566877 (-)
G195194 NA non-coding downstream 10645 388127 ~ 388544 (-)
G195189 NA non-coding downstream 22028 376921 ~ 377161 (-)
G195176 NA non-coding downstream 75127 323849 ~ 324062 (-)
G195172 NA non-coding downstream 87066 311843 ~ 312123 (-)
G195170 NA non-coding downstream 89339 309628 ~ 309850 (-)
G195120 NA non-coding upstream 6155 406967 ~ 407287 (-)
G195202 NA non-coding upstream 54125 454937 ~ 455209 (-)
G195107 NA non-coding upstream 57715 458527 ~ 460525 (-)
CI01000046_00567573_00573618 UBE2KB, UBE2K, UBE2KA, UBE2K.S non-coding upstream 166134 566913 ~ 575050 (-)
G195245 NA non-coding upstream 187313 588125 ~ 588385 (-)
G195097 NA other upstream 6611 407423 ~ 426326 (-)
G195098 NA other upstream 269924 670736 ~ 676128 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other upstream 376921 774434 ~ 780293 (-)
G196463 NA other upstream 1767454 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2465447 2866070 ~ 2867794 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007593 spry1 coding NC_007125.7 CM002898.2 497695 ~ 498979 (-)