CI01000046_00428495_00432835 (SPATA5)


Basic Information

Item Value
gene id CI01000046_00428495_00432835
gene name SPATA5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 427619 ~ 432835 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00428495_00432835.mRNA
GTGTGTGTGGCGTGGCCGACATCTCAGTTTCCCGGCAGGCGTGTTGGTCTGCAGTCCAGCGTTCAGTCGAGTCTGAGAGTGAAGTCTGGAGATCATGTGACCCTGCAGCCCATCACTGGAGCTGTGCTACAGGCTGAACACATCCAGCTGAGCCTCAGGTACCAGCTGTGTTACAGCCATACTTCAACAGACATCATAAACACAATGGGAAAGGTCATAATGAAGATTCAGCTCAGTCCTGAAGACGGAGTGCTGAACACAGAAGAATTCAGGAATTATCTTCTCCGGACCTTGGATAGTCGTGTTCTGCTCCCGGGCGGCAGTGTCTCTGTGTCTTATTTTGGGCGTAACTGTGTGATCGGTGTGGATTCGGTGCGGGGTGTCGACGGAGAGACTCAGACCTCCGTGTCAGACGGAGCCGCTCTCAATCTGTCGTCACAGCTAGAACAGCTCTCCATCCAGCACAGCACACCAAACAGATCACATGACCCTTTACCTCTGACCCCTCAGCCTCCTTCAACACCCTGTAAACCAAGCGACCCTGTTCTCAGTCCGTCTGACCCTTCGTTCACCGACAGTCCTCTGCGTCTGTCTCCCCCTGCTGGACGCTCATCGACAGACACCTTCTACACCGTCTGCAGCTCCACCACGCTGAGCATCTCTGAACCCGCCGAGCAGGACGAGGGCGACGAGAGGTCAAAGGTCACGTACAGTATGATCGGCGGGCTCAGCGGTCAGCTGCAGGTCATCAGGGAGACCATCGAACTGCCGCTCAAACACCCCGAACTCTTCAAAAACTATGGAATCCCGCCTCCTCGAGGTGTGCTGCTGTACGGGCCGCCCGGCACAGGGAAGACTCTGATTGGACGAGCAGTAGCCAATGAAGTGGGAGCTCACATGAGTGTGATCAACGGCCCAGAGATCATGAGCAAGTTTTATGGAGAGACTGAAGCCAGACTGAGGCAGATCTTCACACAGGCCTCACAGAGGCAGCCTGCCATCATCTTCATCGATGAATTAGACGCTCTGTGTCCAAAAAGAGAAGGAGCACAGAATGAGGTGGAGAAGCGGGTCGTCGCCACACTCCTCACACTCATGGACGGGATCGGATCGGAGGGTCACAGCGGTCAGCTGCTGGTTTTGGGAGCCACAAATCGTCCTCATGCGCTGGATCCCGCCCTGCGGCGGCCCGGACGCTTCGATAAGGAGCTGGAGATTGGCGTTCCTGATGCGAACGGCCGGATGGATATCTTACAGAAGCAGCTGCGCTCCATGCCGTGTGACGTCACCGACGACGAGCTGCAGGAACTAGCTGATGCGGCGCATGGATACGTGGGCGCTGATCTCGCCGCCGTCTGCAAGGAAGCTGATGTGTTTGTGTTTTTCCTCTTATTCCAGAGGATAAGCGTGTGTTTAAGACTGGTGTTTCCTCCGCAGCATTCAGGAGTGACACTGAGCTCTTCACTGAAACTGATCTCCGGTCAGTGTCTGATCGATAATGCGCAGTTTCCTCTGAATGACCTGCTGCAGTCCTGAAGAGACACGAGATACACCTCCGCCTCTCTAACGCTCCACCACACTTCATCCTCCGCTAGACTCACTAAAGACTTAATAAGAAAAGCTTAAGAATATTCTTAAGATAAATTCAGAATTTCATAAGAATGTTTCTATGTGCAGTTTTTGAAAAACTCTATTATAATGTACAGTAGTGGCCAGAAGTGATGTCTGGTCTAGGACATTTGACATTTTCAAATATTATTAAAAATAGTTAAAGATTTTAAAAGCATATTGTGCAGTTGAGCTTGTTTTATTTGTGATGATAACTCATGGCAAAATTGTGAACACTTGCAAAAACAAGAGAACCAATGAGATATTAATAACTGATTATGTTTCAGTGATGCTTTAGGGTCCAATTCTCTTTATTAACTAGTTGCTTATTATCATGCATATTACTAGGATATTGGCTGTTTATTAGTACTTATAAAGCAGATATTAATGCCATATTCTACATCCCATAATTCTACCCAATACCTAAACCTAACAACAACCTTACTAACTTTTAAAATGTTTTTTTTTTAATTGTTTTTATTTATATTATATAGTTTATATCTTTATGTGTGTGTGTGTTTAGCATTTAATTAAGTTAATTGTTTTCTAATTTTTTTTAGTGTAATTAATTTTAAGTCATTCTCTGGACCAACGGGCTGGATTCACAAAAATCTTTCTAAAAAAAATTCTAATAAATTCGTAAGAATGTTTCTAAGTGCAATTCATGAAAAACTCTATTATCTAGTGTTCTGTTGTAATGCTTAATATTTGAAACAACCCAATAAATTCATTAAACATCTCATTTTTTGGGGATTTAAAACAGTTATCTATTTTCCTACAAGCAATCTTAAGAAAAAAAATAAA

Function

symbol description
spata5 Orthologous to human SPATA5 (spermatogenesis associated 5).

NR:

description
SPATA5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00428495_00432835.mRNA True 2412 mRNA 0.46 9 427619 432835

Neighbor

gene id symbol gene type direction distance location
CI01000046_00399845_00400761 NA coding downstream 26807 399189 ~ 400812 (-)
CI01000046_00332581_00354353 ANKRD50 coding downstream 73266 332581 ~ 354353 (-)
CI01000046_00224464_00306703 FAT4 coding downstream 120916 224445 ~ 306703 (-)
CI01000046_00085822_00091135 AURKB coding downstream 336484 85184 ~ 91135 (-)
CI01000046_00063416_00065082 NA coding downstream 362537 63153 ~ 65082 (-)
CI01000046_00446100_00446285 FGF2 coding upstream 12736 445571 ~ 446285 (-)
CI01000046_00461851_00464237 NA coding upstream 28880 461715 ~ 464237 (-)
CI01000046_00527690_00528880 NA coding upstream 94677 527512 ~ 528880 (-)
CI01000046_00557959_00566058 CHRNA9 coding upstream 122704 555539 ~ 566877 (-)
CI01000046_00567573_00573618 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding upstream 134078 566913 ~ 575050 (-)
G195120 NA non-coding downstream 20332 406967 ~ 407287 (-)
G195194 NA non-coding downstream 39075 388127 ~ 388544 (-)
G195189 NA non-coding downstream 50458 376921 ~ 377161 (-)
G195176 NA non-coding downstream 103557 323849 ~ 324062 (-)
G195172 NA non-coding downstream 115496 311843 ~ 312123 (-)
G195202 NA non-coding upstream 22102 454937 ~ 455209 (-)
G195107 NA non-coding upstream 25692 458527 ~ 460525 (-)
G195245 NA non-coding upstream 155290 588125 ~ 588385 (-)
G195249 NA non-coding upstream 165450 598285 ~ 599020 (-)
G195097 NA other downstream 1293 407423 ~ 426326 (-)
G195098 NA other upstream 237901 670736 ~ 676128 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other upstream 344898 774434 ~ 780293 (-)
G196463 NA other upstream 1735431 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2433424 2866070 ~ 2867794 (-)
G198265 NA other upstream 3324788 3665243 ~ 3800101 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007595 CABZ01085878.1 coding NC_007125.7 CM002898.2 540157 ~ 552036 (-)