CI01000046_00461851_00464237


Basic Information

Item Value
gene id CI01000046_00461851_00464237
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 461715 ~ 464237 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00461851_00464237.mRNA
ATGGCCGAAAACTCAAAAAAACTCACTTGGTCCGACAAAGACGTCAAAGTGGTGCAAAAACTAAGCGACCTCGATGAATATGACAATGACCCTGCTGTTTTAAGAGTTCAGATGTCTTGCGGTCATGTCGCAGATCCGCTGACACTGACAGACTGCTGCAAAGCTCAACTGTCAGATGGAGAAACAGTATTTAAGTGTATTCTGTGTGAGAAAGTATGGCCATATGATGAAGTCCGAAAATCCGCCAAACTAACAAATAATGAGCGAATAGGTTTTGAGGATAAGCTTGGAACAAATGCTGTTAAGAAGTCTGTTGAAAGCGTAAAGGATTGTCCTGGCTGTGGCACTTTTATTCAGAGGGTGCACACTACCAATCTCGCCGTAGAATGCTTACTCTGCACAGAAAAGACCGGGAAAATCTATGAATTCTGCTGGCAGTGTCAGAGAGAGTGGAAAGGGCCTCGACCTCGTGACGATCAGTGTGAAAATGTGGGTTGCAACATCAAGGACCGGGAACTACTTAAAGACTGTTCAATGGTCACTTTAACATCTGTGCAAAATGTCCTGTGTCCAGCGATTCGTGCCTGCCCATTTTGTGGTGTGCTGATTGAACACCTGCAAATTGGATGTAAAATTATGACATGCAAGAAATGTAACAGAGCGTTTTGCTTTGTCTGTCTTAAACCTGCTCAAGAGTGCCTACAAACATCCACTCATTATGTGTTATGCTCAGCTGAAGTCGCACCGAAGCAAGTAGAAGTTCTAAGATTGTGAGCAGATGTGCTGTAAATTATGCAGAAATGATGTTTATGTACAAATAATCTAGCATATTGTGCAATGCATATATATTCCGAGAATGATTTTAAATGATTTCCGATGTTTTTTTTTTTTTCTTTATTTGAGAAATAAA

Function

NR:

description
Probable E3 ubiquitin-protein ligase RNF144A-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00461851_00464237.mRNA True 910 mRNA 0.41 4 461715 464237

Neighbor

gene id symbol gene type direction distance location
CI01000046_00446100_00446285 FGF2 coding downstream 15430 445571 ~ 446285 (-)
CI01000046_00428495_00432835 SPATA5 coding downstream 28880 427619 ~ 432835 (-)
CI01000046_00399845_00400761 NA coding downstream 60903 399189 ~ 400812 (-)
CI01000046_00332581_00354353 ANKRD50 coding downstream 107362 332581 ~ 354353 (-)
CI01000046_00224464_00306703 FAT4 coding downstream 155012 224445 ~ 306703 (-)
CI01000046_00527690_00528880 NA coding upstream 63275 527512 ~ 528880 (-)
CI01000046_00557959_00566058 CHRNA9 coding upstream 91302 555539 ~ 566877 (-)
CI01000046_00567573_00573618 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding upstream 102676 566913 ~ 575050 (-)
CI01000046_00589815_00591549 NA coding upstream 125411 589648 ~ 591549 (-)
CI01000046_00619217_00636285 NA coding upstream 154732 618969 ~ 636446 (-)
G195107 NA non-coding downstream 1190 458527 ~ 460525 (-)
G195202 NA non-coding downstream 6506 454937 ~ 455209 (-)
G195120 NA non-coding downstream 54428 406967 ~ 407287 (-)
G195194 NA non-coding downstream 73171 388127 ~ 388544 (-)
G195189 NA non-coding downstream 84554 376921 ~ 377161 (-)
G195245 NA non-coding upstream 123888 588125 ~ 588385 (-)
G195249 NA non-coding upstream 134048 598285 ~ 599020 (-)
G195250 NA non-coding upstream 134903 599140 ~ 599950 (-)
G195124 NA non-coding upstream 205832 670069 ~ 670568 (-)
G195097 NA other downstream 35389 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 395804 63153 ~ 65082 (-)
G195098 NA other upstream 206499 670736 ~ 676128 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other upstream 313496 774434 ~ 780293 (-)
G196463 NA other upstream 1704029 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2402022 2866070 ~ 2867794 (-)
G198265 NA other upstream 3293386 3665243 ~ 3800101 (-)

Expression


Co-expression Network