CI01000046_00660745_00664133


Basic Information

Item Value
gene id CI01000046_00660745_00664133
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 659204 ~ 664133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00660745_00664133.mRNA
GCTCATGCTAAAGCGTGGCACATCTACGACAAACTCTTCAGACCTCATCAGGGCGGTAAAGTCTCCATCACTCTCGGCTCTCATTGGGTGGAGCCTCTTCACGGTCAGGCCTCGCCAGCCAATGTGGAGCTCTGTCAGAAGTCCATGGAGGCTGTGATTGGCTGGTTTGCAGAGCCCATATATGGAAGTGGAGATTATCCAGAGTCCCTGAAGGCCTCGAACCGAGGTGTAATCCCAGAGTTCACTCCTGATGAGAGGCTCTATGTGAGGGGAACCGCAGACTTCTTCTCCTTGGCCTTCGGGCCGGAGACCCTGAGGGTGGGCCGAGGATTGGCCCGGTTCGGGCAGACGGTGACGCCGGACTTGAGGAGCGTTCTGGTCTGGGTTCAGCAGATGTACGCTGTTTCCGTGGATGGAGTGAGTGTGTTTGGATACACAGCCTGGAGTCTGGTGGACGGTTTTGAGTGGAATCACGGTTACAGCGTGCGGAGGGGATTGTTCTACATCGACTTCAGTCGACCCGAGCGCCACAGGCTCCCGAAGACTAGCGCACGCTTCTACAGACGGCTGGTCCAGGACAACGGCTTCCCTGCCGACAACACGAAACACATCGAGGGCCGATTCCCCTGCGACTTCCAGTTTGGTGTGTCGGAATCAGTATTACAGGTGCATCTGCGTCCGTTCTCGCCGCAGTTCACCGATCCGCACCTGTACCGCTGGAACTACTCCGGCGACGGCGTTCTCAAACCCGTGACGGGCATCGTGCTTTACACGCGGGCGGCGCAGTGCACTGACTTCCTGTACATTCAGCGTCACCTCTTTCTCCTAGGGGTCACGGGGTCATCACACTACCGGTTTGCCCTGGACTGGACCCAGCTCATGCCCAGCGGCGACCCGTCGTCTGTGGATGCGGAGAAGGTTCGGTTCTACCGGTGTGTGCTGAGCGAGCTCGTCCGCAGAGGAATCCAGCCGGTCGTGACCCTGTATCATCCCAGCAACAGGTCGCCCTCACTGGGTCTGCCCGAACCGCTGCACGCTAACGGCGGCTGGAGAAACGACAGTGTCGTGGAGGCCTTTGTCAAGTTCGCCACATTCTGTTACCAGGAATTTGGTGGCTTGGTACCGACGTGGATCACCATTAATGAGCCGAACCGGCTAACGGATGCGTACGGCGGGACGGCTGAGGACAGACGAGCGGTAGCGTGTCACCTGCTCCTGGCGCACGCGAAGGCCTGGCGCGTTTACGACACGCGGTTCCGGCTGCAGCAGGGGGCGGCGGTTAGCATCGCGCTTCATGCTGATTGGGTAGAACCGGCCAATCCGTTCGTAGAATCACATGAAGATGCACAGCAGCATTTTTTGCTGTTCGAACTGGGCCGTTTTCTCGACCCTCTGTTTGAGGGGCGTGACAGCGCTCTGATTGGCTTCACCGACGACGAAAGGGAGGAGCTTAAAGGGGCGCTGGATTTCATCGCTCTGAATCACTTCACAACACGTCTGGTGTCACCGCTGCACCAACCGTCACCACAGAACCCAAACCCACCCAAACCGCCGAACCAGGACCACGGCTTCTCGCTAATGACTGACCTCACCTGGCCGTCATCACACATGAGACAGGCGCTTGTGCCCTGGGGCCTCCGCAGGATGCTGGGGTGGGTGAAGAATCGCTATGGCAACGAGCTGCCCATCATTATCACAGCATCAGGGGTGGATGACCACGCACCCCATAATGACCAGCTGAGACAGCGCTATATCAGAGACTACCTGCAGGAGGCGCTGAAGGGTGAGCTGAATCTGAATATAACGATTTAAGAATTTCAGAAGCATATTTTTGGGTGTTTTTAATTATATTTTTTTATCATTATTTTTATATTATTTTTTATAAATTTTGTTTTATTATTTTATCATAATTTGTATTATATTTTTATTTTTAGTTTATTTTAATATTATTTTTATTTTTAGTTTATTTTAATATTTAATTTTTATTTTTATTTCATTATTGTATTTTATTTTATTTTTAGTTTATTTTATTATTTTATTTTAGCATTTTTTTTTTTAATTTATAATATTTATTTATTTATTTATTTATTTATTTTGTTATTGCATTTGGTATCAAGCACAACAGTGACTGTCCCACTTTTAGCATTCGCTTGGTTCCATTATTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTCCAATTCATTTTCTTAAGCAATTTAAATGTATATATATATATATATATGTATATATATATATATATATATATACACCCTAGCTAATAATTCATTAAATGTAAAATTAATTATTTAAAAAAAAAAAAAAAACATAAAAAACTTTCTAAATAACATTTTTTTATTTGTTTACCTGCATGTCACGTGACCATTCACTGAAATCAGAGAACCATGAACATGCAAAAGTGTTGTTAAATTATTGAAATATTAACTAAATCATAAATGTAATATATTTCTTAATTTTATTCCTTAAACTAATTTAAAAAATACAATTATTTTTGAACAAAACTTTTGATCTGAAGCAAAAAAATAAAAAATAAAATAAAATGGAAGTTTGTACCCTCAAATCTCTGATATTTTGGTCTTCATGATAATATGACGTGTGTTCAAATATTTAACTGTAAATATGAGCAATAGAAACAGTGTTACTTGCCTCAGCAATCATCACTAATGAGTTTTGATTATGAAACATGTCCCTATTATTATCTAAAAACATCAGAGATTAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00660745_00664133.mRNA True 3353 mRNA 0.36 3 659204 664133

Neighbor

gene id symbol gene type direction distance location
CI01000046_00619217_00636285 NA coding downstream 22758 618969 ~ 636446 (-)
CI01000046_00589815_00591549 NA coding downstream 67655 589648 ~ 591549 (-)
CI01000046_00567573_00573618 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding downstream 84154 566913 ~ 575050 (-)
CI01000046_00557959_00566058 CHRNA9 coding downstream 92327 555539 ~ 566877 (-)
CI01000046_00527690_00528880 NA coding downstream 130324 527512 ~ 528880 (-)
CI01000046_00665298_00665879 NA coding upstream 1165 665298 ~ 665879 (-)
CI01000046_00690567_00697727 NA coding upstream 26007 690140 ~ 699872 (-)
CI01000046_00702360_00703954 NA coding upstream 37806 701939 ~ 703954 (-)
CI01000046_00749734_00763064 NA coding upstream 85551 749684 ~ 763481 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S coding upstream 113539 774434 ~ 780293 (-)
G195250 NA non-coding downstream 59254 599140 ~ 599950 (-)
G195249 NA non-coding downstream 60184 598285 ~ 599020 (-)
G195245 NA non-coding downstream 70819 588125 ~ 588385 (-)
G195107 NA non-coding downstream 198679 458527 ~ 460525 (-)
G195124 NA non-coding upstream 5936 670069 ~ 670568 (-)
G195104 NA non-coding upstream 14127 678260 ~ 682667 (-)
G195127 NA non-coding upstream 19562 683695 ~ 684595 (-)
G195268 NA non-coding upstream 40300 704433 ~ 722196 (-)
G195101 NA non-coding upstream 70937 735070 ~ 736556 (-)
G195097 NA other downstream 232878 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 593293 63153 ~ 65082 (-)
G195098 NA other upstream 6603 670736 ~ 676128 (-)
G196463 NA other upstream 1504133 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2202126 2866070 ~ 2867794 (-)
G198265 NA other upstream 3093490 3665243 ~ 3800101 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007026 klb coding NC_007125.7 CM002898.2 740032 ~ 750043 (+)