CI01000046_00777923_00780186 (RPC11, POLR3K, POLR3K.S)


Basic Information

Item Value
gene id CI01000046_00777923_00780186
gene name RPC11, POLR3K, POLR3K.S
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 774434 ~ 780293 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00777923_00780186.mRNA
ATGCTTCTGTTTTGCCCAACTTGTGGGAATGTGTTAATCGTAGAGGAGGGACAAAGATGCTTCAGGTTCGCGTGTAATACATGTCCATATGTGCACAACATCACGAGGAAGGTAAATAACAGAAAGTACCCTAAACTAAAGGAGGTTGATGATGTTCTCGGGGGCTCCGCTGCTTGGGAAAATGTGGATTCCACTGCAGAACCTTGTCCAAAATGTGAGCACCCAAGGGCCTACTTTATGCAGATTCAAACTAGGTCTGCTGATGAACCAATGACAACTTTCTACAAGTGCTGCAATCTACAATGTGGGCATCGTTGGAGAGATTAAATCAGTTTTGGACTTCCTTTGAGACTCAGAACATGTGTTCATAATGTAATATTCTGTTTTCATATAGAAAATGTTATATTTATTTCTTTTGCAGCCAAAAGCATGTCATCATTTATATGGATTAAAAACCTTGGACGCCCTTTACACATTAACTTTATTCACTAACTGCAACAGCATGTGTATTTATCATAAGCTGGGTTGTTCTGGCCTCATGGCTGTTTTTGTGTGTGTGTGTGTGTGCAAGTAATAAA
>TU221592
CTTATGCTTCCTGTAGAAACGAGATGTGAATGTGTGTAAACACCAACTTTAATTTAATCAGAAAAGTACCAGTGTTTAGTATACAATATTATATATAACCGTTGAAAATGCTTCTGTTTTGCCCAACTTGTGGGAATGTGTTAATCGTAGAGGAGGGACAAAGATGCTTCAGGTTCGCGTGTAATACATGTCCATATGTGCACAACATCACGAGGAAGGTAAATAACAGAAAGTACCCTAAACTAAAGGAGGTTGATGATGTTCTCGGGGGCTCCGCTGCTTGGGAAAATGTGGATTCCACTGCAGAACCTTGTCCAAAATGTGAGCACCCAAGGGCCTACTTTATGCAGATTCAAACTAGGTCTGCTGATGAACCAATGACAACTTTCTACAAGTGCTGCAATCTACAATGTGGGCATCGTTGGAGAGATTAAATCAGTTTTGGACTTCCTTTGAGACTCAGAACATGTGTTCATAATGTAATATTCTGTTTTCATATAGAAAATGTTATATTTATTTCTTTTGCAGCCAAAAGCATGTCATCATTTATATGGATTAAAAACCTTGGACGCCCTTTACACATTAACTTTATTCACTAACTGCAACAGCATGTGTATTTATCATAAGCTGGGTTGTTCTGGCCTCATGGCTGTTTTTGTGTGTGTGTGTGTGTGCAAGTAATAAAATGACTACTCATATATGATAGTCTTTTTATTTGTTCAAATAATCATTAAGTCCATAAGTTTTGTTTTACATACACATTTGAGACTTCAGTTGAGCGTGGCATCTGGTGTAATGCCACAGATTATTCTCAAGGCATCTATCTACAACTGCATTCCTGTAACACAAGCTTGACATCTACTGTCTGCAACAGCATTAAGTCACTTCACAAAGCAAGTAGACCTACGTAATCAAGAGCATATTAGATTAAAGGGAGCCAGCCTGGATTGTGCAAGTAAACCCCATGAACATGCATATTTACTGGAGATTATCTTTCAGTAATCGAACAGACATCATGTAGTTTTTGTATATTTTTGATTTGCGAATGATGGACAGGTATCTTTATGATATTATAGGTCTTGGTTCATTTTTTTTTTTCCTCTTTCTTTTCTCCCAGTCAGAAAATAGACTGCTGGGTGTACTTTGAAAACAGAATTGAAAGTGTCAAAAGTTATTTTTGTAATGCCTGCAAACACAAATGGGTAAAGGCGCAAATACTATGAAAATTTCAGTGTTCGTTGGAAAGATCCGATTAAAAAGAATCATTTACAATGAGATAGCAAGTTTGAATACATATACACACACACTAGCGATTGCTACATTTTTTCCCTTCATGGTAAATACTACAATGGAAAGATGGAGATTCTGATTCTTAAACCGCTATAATATTGGCAGATTGTCTACATGAGAAAGATGATTATCTGAATCTTCATTTAAAGCTACACTACGCAACTTTTGTTTGATAACATGTTTATGAAAGTGAAAAAATCTTCCAAATGTCTTTTAGCCCAATACACTTTGATAAATCTATAATAACGATTTATATTTTGAAAGCTGTCGGGATGGATTTTGTGGTAAAAATAGCATACATACGTCATCGCCCATGCGTGTCACGATTTATCCGTGATATATCCGTACACATATATCCGCGCATTAATGTGGCAGCAGCGTAAAGCTAAAAGTTTACCGCCACAACAAACGAGAAAAATTCACCGTGAATCATTTAAAACGGCAAGCCTCCAGGGAATCACGGGTTGTAAAAATAAAGAAACCCTCGAAACTACGTTAAACTGGTAGCACAGCCGAAGCACAACCAAGACGCATTTTGTTTTCTTTTTTTATCTGCTACAGGGCCAAAAGTTACGTAGTGTAGCTTTAAGGAAAATTAAAACTGGAGGTTAAGTTATACAGTGTCTAATCACTGCTGATTAAATCACATTTTTGGACCGAGCTATTCAGAAACGACCAAATAAAGGAAACAATCTCTTAGGATGATTCCTGAGAAATTACACATCTGACCACAAAATTTAAGAAAAATTGGGACAATCAACCTTTAAATCCTTGTGGCCTTTCACACACAGTTTTAATAATACAGTGCTTATGTATATTGAGATATATAGTGTCTTGAGCACTGCGGATGTTGTATATTTTGTATCTCGTACCATTTAGCAGTAAATCACATTGTTGGACAGAGCAAAATGATTTGAAAGTTTACACTTTCACAACCAAAATGACCAATATAAAACAAACAATCTCTTTGGATGATTCCACAGAAATCACAATCTGACCACAAATAGGAAAAAAAAAATCAGGACAATTATCATTTAAATCCTTGTGGCTTGTTACACACAGTATTAAAAAGTGAATGGTTAATCTGCTTTGAGAGATGAAGCCCAGTGCAGCAACAAGCACAGCTTGACACACTGACGGGACATATGGCCCAATAGAGAGCTATGCAAGATTACAGTGATGCCATGCAGCGCGCTTCATCATGCTGGTGAACTCCAACAGCAAAGCAGCTTTGAACAGCCGTTACAAGAAATATCTTCCCTTTTTGAAGAAGACAACTTCACCATGTCAAGTTGAACTTGAAATGAAAAAAATAATGCAACAGCCACTTCTAAACATGTTGTTTATCAGCAGTGCTGGCCAGAATAAATGTTAAAGGATGCTTATCTGTGATGAGACATGATTCTACACTGATCTTACTATCAACAAACACCATTAATGACCGGTAAACTGACCTGGATAGCCAATGATAGTTTATAGAAGGCTCAAACAGCTTACTGACGACACAGAACAGCTAGTATAGTGGTTTGAAAAGCACCGTGGCTATAGTTTTGATTCACAGTTCAAAAAAAAAAAAAAAAAAAAAAAATGAAATGTATATTGGTTGAATTTCACAAATATGACCCTAATATGAACTGCATGGCATATTAAAACACCATGAGCCCTAAATTATTTAAATCCCTAAATTACTAAAGGAGATTTAGATGGACATACACATCCCTTATTAATAGAAACCTTTCATCTAAAATGACATCTGCACAACAATGCATGTTACATAGATAAGCATATCAGGTCGACTTCAAATGAGTCTTGTCGACAAATATACAAAACAAAAGTGAAAGAAAAAAAATTTCCATAACATTTGCATAAAATGCCAAATATAGAGACATTTTTCACATGTAAAAGCAACAACGTTACTCCAGGACTTGAACGGTTCCAGACCCAGCCATCTAAGACTTTCATTTTAACATGTTAAAATAAAACAATAATGAATAAAATAATAATCCTACAATCCAACAGTACTGTCCCTGTAGTGAAATCATTTAGTTTCGCTACTCAGTAATATTCACAAATGAGCTTGTCAAAGTTAGCGTTTTCACATATTTTCTACATGTATACACTTTGTTCTACTGCTAAAAAAAAAAAACGTGACCTTTGTGCATATAAAATGTACCAAACCTTCATGCCCCCTGCTTCATTTTAGAGGCGTCAGTAACTACATCAAGTGCCTGTAAATTAAAAGTGAGAATCAATAGTTACATAAAGTGAGAAATGGCTAGAAATACGAGCTGTCAGCTGGGGCAAAATGATCACAGAGCAGACGGAAAGAAAAGTGAGTCTTCAACACCCACCAGAATGAGGTCACAGCGCGATCGTTAATGGGATAAACTGTTAGCATATGCGCTTGTATGTGTAAATATAGCCCTTGCAGTTGGGGCAAGTGTGTGTCACATCCTTGAGGTCGTCAATCATACATGGGATCAAGCAGCAACCTAGATCACAACTGTAAAACAAAGACAAAGTTCATGAGGAATCTCAAGAATGTACTGTAAGGTTCATCATTCAGGGCTCATTATGTATTCATTTATTCAAAACTAAACAAAAATGCAATTCATGCATGCATGACCTGAATA
>TU221590
CTTATGCTTCCTGTAGAAACGAGATGTGAATGTGTGTAAACACCAACTTTAATTTAATCAGAAAAGTACCAGTGTTTAGTATACAATATTATATATAACCGTTGAAAATGCTTCTGTTTTGCCCAACTTGTGGGAATGTGTTAATCGTAGAGGAGGGACAAAGATGCTTCAGGTTCGCGTGTAATACATGTCCATATGTGCACAACATCACGAGGAAGGTAAATAACAGAAAGTACCCTAAACTAAAGGAGGTTGATGATGTTCTCGGGGGCTCCGCTGCTTGGGAAAATGTGGATTCCACTGCAGAACCTTGTCCAAAATGTGAGCACCCAAGGGCCTACTTTATGCAGATTCAAACTAGGTCTGCTGATGAACCAATGACAACTTTCTACAAGTGCTGCAATCTACAATGTGGGCATCGTTGGAGAGATTAAATCAGTTTTGGACTTCCTTTGAGACTCAGAACATGTGTTCATAATGTAATATTCTGTTTTCATATAGAAAATGTTATATTTATTTCTTTTGCAGCCAAAAGCATGTCATCATTTATATGGATTAAAAACCTTGGACGCCCTTTACACATTAACTTTATTCACTAACTGCAACAGCATGTGTATTTATCATAAGCTGGGTTGTTCTGGCCTCATGGCTGTTTTTGTGTGTGTGTGTGTGTGCAAGTAATAAAATGACTACTCATATATGATAGTCTTTTTATTTGTTCAAATAATCATTAAGTCCATAAGTTTTGTTTTACATACACATTTGAGACTTCAGTTGAGCGTGGCATCTGGTGTAATGCCACAGATTATTCTCAAGGCATCTATCTACAACTGCATTCCTGTAACACAAGCTTGACATCTACTGTCTGCAACAGCATTAAGTCACTTCACAAAGCAAGTAGACCTACGTAATCAAGAGCATATTAGATTAAAGGGAGCCAGCCTGGATTGTGCAAGTAAACCCCATGAACATGCATATTTACTGGAGATTATCTTTCAGTAATCGAACAGACATCATGTAGTTTTTGTATATTTTTGATTTGCGAATGATGGACAGGTATCTTTATGATATTATAGGTCTTGGTTCATTTTTTTTTTTCCTCTTTCTTTTCTCCCAGTCAGAAAATAGACTGCTGGGTGTACTTTGAAAACAGAATTGAAAGTGTCAAAAGTTATTTTTGTAATGCCTGCAAACACAAATGGGTAAAGGCGCAAATACTATGAAAATTTCAGTGTTCGTTGGAAAGATCCGATTAAAAAGAATCATTTACAATGAGATAGCAAGTTTGAATACATATACACACACACTAGCGATTGCTACATTTTTTCCCTTCATGGTAAATACTACAATGGAAAGATGGAGATTCTGATTCTTAAACCGCTATAATATTGGCAGATTGTCTACATGAGAAAGATGATTATCTGAATCTTCATTTAAAGCTACACTACGCAACTTTTGTTTGATAACATGTTTATGAAAGTGAAAAAATCTTCCAAATGTCTTTTAGCCCAATACACTTTGATAAATCTATAATAACGATTTATATTTTGAAAGCTGTCGGGATGGATTTTGTGGTAAAAATAGCATACATACGTCATCGCCCATGCGTGTCACGATTTATCCGTGATATATCCGTACACATATATCCGCGCATTAATGTGGCAGCAGCGTAAAGCTAAAAGTTTACCGCCACAACAAACGAGAAAAATTCACCGTGAATCATTTAAAACGGCAAGCCTCCAGGGAATCACGGGTTGTAAAAATAAAGAAACCCTCGAAACTACGTTAAACTGGTAGCACAGCCGAAGCACAACCAAGACGCATTTTGTTTTCTTTTTTTATCTGCTACAGGGCCAAAAGTTACGTAGTGTAGCTTTAAGGAAAATTAAAACTGGAGGTTAAGTTATACAGTGTCTAATCACTGCTGATTAAATCACATTTTTGGACCGAGCTATTCAGAAACGACCAAATAAAGGAAACAATCTCTTAGGATGATTCCTGAGAAATTACACATCTGACCACAAAATTTAAGAAAAATTGGGACAATCAACCTTTAAATCCTTGTGGCCTTTCACACACAGTTTTAATAATACAGTGCTTATGTATATTGAGATATATAGTGTCTTGAGCACTGCGGATGTTGTATATTTTGTATCTCGTACCATTTAGCAGTAAATCACATTGTTGGACAGAGCAAAATGATTTGAAAGTTTACACTTTCACAACCAAAATGACCAATATAAAACAAACAATCTCTTTGGATGATTCCACAGAAATCACAATCTGACCACAAATAGGAAAAAAAAAATCAGGACAATTATCATTTAAATCCTTGTGGCTTGTTACACACAGTATTAAAAAGTGAATGGTTAATCTGCTTTGAGAGATGAAGCCCAGTGCAGCAACAAGCACAGCTTGACACACTGACGGGACATATGGCCCAATAGAGAGCTATGCAAGATTACAGTGATGCCATGCAGCGCGCTTCATCATGCTGGTGAACTCCAACAGCAAAGCAGCTTTGAACAGCCGTTACAAGAAATATCTTCCCTTTTTGAAGAAGACAACTTCACCATGTCAAGTTGAACTTGAAATGAAAAAAATAATGCAACAGCCACTTCTAAACATGTTGTTTATCAGCAGTGCTGGCCAGAATAAATGTTAAAGGATGCTTATCTGTGATGAGACATGATTCTACACTGATCTTACTATCAACAAACACCATTAATGACCGGTAAACTGACCTGGATAGCCAATGATAGTTTATAGAAGGCTCAAACAGCTTACTGACGACACAGAACAGCTAGTATAGTGGTTTGAAAAGCACCGTGGCTATAGTTTTGATTCACAGTTCAAAAAAAAAAAAAAAAAAAAAAAATGAAATGTATATTGGTTGAATTTCACAAATATGACCCTAATATGAACTGCATGGCATATTAAAACACCATGAGCCCTAAATTATTTAAATCCCTAAATTACTAAAGGAGATTTAGATGGACATACACATCCCTTATTAATAGAAACCTTTCATCTAAAATGACATCTGCACAACAATGCATGTTACATAGATAAGCATATCAGGTCGACTTCAAATGAGTCTTGTCGACAAATATACAAAACAAAAGTGAAAGAAAAAAAATTTCCATAACATTTGCATAAAATGCCAAATATAGAGACATTTTTCACATGTAAAAGCAACAACGTTACTCCAGGACTTGAACGGTTCCAGACCCAGCCATCTAAGACTTTCATTTTAACATGTTAAAATAAAACAATAATGAATAAAATAATAATCCTACAATCCAACAGTACTGTCCCTGTAGTGAAATCATTTAGTTTCGCTACTCAGTAATATTCACAAATGAGCTTGTCAAAGTTAGCGTTTTCACATATTTTCTACATGTATACACTTTGTTCTACTGCTAAAAAAAAAAAACGTGACCTTTGTGCATATAAAATGTACCAAACCTTCATGCCCCCTGCTTCATTTTAGAGGCGTCAGTAACTACATCAAGTGCCTGTAAATTAAAAGTGAGAATCAATAGTTACATAAAGTGAGAAATGGCTAGAAATACGAGCTGTCAGCTGGGGCAAAATGATCACAGAGCAGACGGAAAGAAAAGTGAGTCTTCAACACCCACCAGAATGAGGTCACAGCGCGATCGTTAATGGGATAAACTGTTAGCATATGCGCTTGTATGTGTAAATATAGCCCTTGCAGTTGGGGCAAGTGTGTGTCACATCCTTGAGGTCGTCAATCATACATGGGATCAAGC
>TU221589
CTTATGCTTCCTGTAGAAACGAGATGTGAATGTGTGTAAACACCAACTTTAATTTAATCAGAAAAGTACCAGTGTTTAGTATACAATATTATATATAACCGTTGAAAATGCTTCTGTTTTGCCCAACTTGTGGGAATGTGTTAATCGTAGAGGAGGGACAAAGATGCTTCAGGTTCGCGTGTAATACATGTCCATATGTGCACAACATCACGAGGAAGGTAAATAACAGAAAGTACCCTAAACTAAAGGAGGTTGATGATGTTCTCGGGGGCTCCGCTGCTTGGGAAAATGTGGATTCCACTGCAGAACCTTGTCCAAAATGTGAGCACCCAAGGGCCTACTTTATGCAGATTCAAACTAGGTCTGCTGATGAACCAATGACAACTTTCTACAAGTGCTGCAATCTACAATGTGGGCATCGTTGGAGAGATTAAATCAGTTTTGGACTTCCTTTGAGACTCAGAACATGTGTTCATAATGTAATATTCTGTTTTCATATAGAAAATGTTATATTTATTTCTTTTGCAGCCAAAAGCATGTCATCATTTATATGGATTAAAAACCTTGGACGCCCTTTACACATTAACTTTATTCACTAACTGCAACAGCATGTGTATTTATCAT

Function

symbol description
polr3k Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase III complex. Is expressed in hematopoietic system. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human POLR3K (RNA polymerase III subunit K).
rpc11 Contributes to RNA polymerase III activity. Involved in tRNA transcription by RNA polymerase III and termination of RNA polymerase III transcription. Part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human POLR3K (RNA polymerase III subunit K).

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
K03019 RPC11, POLR3K; DNA-directed RNA polymerase III subunit RPC11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00777923_00780186.mRNA False 578 mRNA 0.40 3 777672 780186
TU221592 False 3923 lncRNA 0.36 3 774434 780293
TU221590 False 3776 lncRNA 0.36 3 774581 780293
TU221589 True 624 TUCP 0.38 3 777733 780293

Neighbor

gene id symbol gene type direction distance location
CI01000046_00749734_00763064 NA coding downstream 14191 749684 ~ 763481 (-)
CI01000046_00702360_00703954 NA coding downstream 73718 701939 ~ 703954 (-)
CI01000046_00690567_00697727 NA coding downstream 77800 690140 ~ 699872 (-)
CI01000046_00665298_00665879 NA coding downstream 111793 665298 ~ 665879 (-)
CI01000046_00660745_00664133 NA coding downstream 113539 659204 ~ 664133 (-)
CI01000046_00790248_00814884 MKL2B coding upstream 9997 790183 ~ 814884 (-)
CI01000046_01047300_01066367 UNKL, UNKL.S coding upstream 267023 1047209 ~ 1066367 (-)
CI01000046_01074910_01076076 GPER1 coding upstream 294612 1074798 ~ 1076424 (-)
CI01000046_01098117_01099160 GPR146 coding upstream 317072 1097258 ~ 1099160 (-)
CI01000046_01167146_01194022 BAIAP3 coding upstream 386842 1167028 ~ 1194022 (-)
G195115 NA non-coding downstream 7566 764897 ~ 770106 (-)
G195101 NA non-coding downstream 41116 735070 ~ 736556 (-)
G195268 NA non-coding downstream 55476 704433 ~ 722196 (-)
G195127 NA non-coding downstream 93077 683695 ~ 684595 (-)
G195104 NA non-coding downstream 95005 678260 ~ 682667 (-)
G195280 NA non-coding upstream 59178 839364 ~ 839703 (-)
G195282 NA non-coding upstream 60241 840427 ~ 840692 (-)
G195307 NA non-coding upstream 92922 873108 ~ 933608 (-)
G195333 NA non-coding upstream 123190 903376 ~ 903776 (-)
G195403 NA non-coding upstream 304658 1084844 ~ 1085092 (-)
G195098 NA other downstream 101544 670736 ~ 676128 (-)
G195097 NA other downstream 351346 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 711761 63153 ~ 65082 (-)
G196463 NA other upstream 1388080 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2086073 2866070 ~ 2867794 (-)
G198265 NA other upstream 2977437 3665243 ~ 3800101 (-)
G199054 NA other upstream 5317173 6097359 ~ 6097674 (-)
G199014 NA other upstream 5583992 6364178 ~ 6375406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025673 polr3k coding NC_007114.7 CM002887.2 46380086 ~ 46384147 (+)