Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_009360 (AL929092.1)

Basic Information

Item	Value
gene id	XLOC_009360
gene name	AL929092.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	31547734 ~ 31547852 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018396
TCCATCGGCGACTCAAAATCagagctaaaatcatgcagtctgaacacGGCATCAGCAAAGCTAAgtttggtcagtacctggatgggggaccacatggaaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000085791

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00018396	True	119	rRNA	0.47	1	31547734	31547852

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_009359	hmgb1b	coding	downstream	31151	31513065 ~ 31516583 (-)
XLOC_009358	si:dkey-1m11.5	coding	downstream	39513	31500785 ~ 31508221 (-)
XLOC_009357	si:dkey-1m11.6	coding	downstream	49611	31485877 ~ 31498123 (-)
XLOC_009356	or111-11	coding	downstream	127929	31417886 ~ 31419805 (-)
XLOC_009355	or111-10	coding	downstream	133736	31412595 ~ 31413998 (-)
XLOC_009361	hsph1	coding	upstream	16285	31564137 ~ 31588162 (-)
XLOC_009362	CR388091.1	coding	upstream	515440	32063292 ~ 32063409 (-)
XLOC_009363	c4	coding	upstream	804034	32351886 ~ 32383529 (-)
XLOC_009364	NA	coding	upstream	865462	32413314 ~ 32433673 (-)
XLOC_009365	frem2b	coding	upstream	889055	32436907 ~ 32596155 (-)
XLOC_009348	AL845428.2	non-coding	downstream	185593	31361787 ~ 31362141 (-)
XLOC_009344	AL928851.1	non-coding	downstream	232186	31315209 ~ 31315548 (-)
XLOC_009342	AL928851.2	non-coding	downstream	248056	31299563 ~ 31299678 (-)
XLOC_009333	AL928870.1	non-coding	downstream	535022	31005981 ~ 31012712 (-)
XLOC_009331	NA	non-coding	downstream	623645	30923150 ~ 30924089 (-)
XLOC_009366	CR855389.2	non-coding	upstream	1085438	32633290 ~ 32635777 (-)
XLOC_009367	NA	non-coding	upstream	1265884	32813736 ~ 32817995 (-)
XLOC_009370	CT027778.1	non-coding	upstream	2115203	33663055 ~ 33663172 (-)

Expression

Co-expression Network