CI01000046_01236373_01241067 (UBE2I)


Basic Information

Item Value
gene id CI01000046_01236373_01241067
gene name UBE2I
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1235992 ~ 1241067 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_01236373_01241067.mRNA
GTTTTCAATCATTTAGCGGGCCACAAGTCATGTCTGGTATAGCGTTAAGTCGCCTCGCACAAGAACGAAAGGCTTGGCGGAAAGACCATCCTTTTGTAAGTAAATTTGAGCCTCCTTTATTCCATCCGAATGTATATCCGTCTGGTACCGTATGCTTGTCTATTTTAGAGGAAGACAAAGACTGGAGGCCTGCCATTACAATCAAGCAGATCTTGCTAGGAATCCAAGAACTCCTTAATGAACCAAATATTCAGGACCCCGCACAGGCTGAGGCATACACAATTTACTGCCAAAACAGAGTGGAGTATGAAAAAAGGGTCAGAGCACAAGCCAAAAAGTTCTCGCCGTAAACCTCAAGATTTCGCACTGTAATGGAAATGGGTTTTGACCAGGTCTCCTCACCCCTGTTACTCCCCCTTTACAAATCATATCCACTTCATACTGATTTACTGCTGGGCTTAAAGAAATGAATGTGTCGTGCCATTGTTGATCCACTGATGCTCGTCCTAACAAACTCTTCCTGGAGGTTTTAAATTTGGCCTTTTGTATAATATATATATTTATATATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCCAGTTGGGCAAATCCACAGCAGAGGAGCTCACACTAAGTTGTGTGAGGTGTGGCTTTTTTTTTTTTTTTGTGGGTGGGGTTACTTGGTAACAGTGCTACATATTTACAAAAAAGGCACAATAAA

Function

symbol description
ube2i Enables several functions, including RING-like zinc finger domain binding activity; SUMO conjugating enzyme activity; and small protein activating enzyme binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of SUMO transferase activity; and protein sumoylation. Located in PML body and cytoplasm. Part of sumoylated E2 ligase complex and transferase complex. Biomarker of dilated cardiomyopathy; ovarian cancer; and urinary bladder cancer.

GO: NA

KEGG:

id description
K10577 UBE2I, UBC9; ubiquitin-conjugating enzyme E2 I

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_01236373_01241067.mRNA True 731 mRNA 0.40 4 1235992 1241067

Neighbor

gene id symbol gene type direction distance location
CI01000046_01167146_01194022 BAIAP3 coding downstream 41970 1167028 ~ 1194022 (-)
CI01000046_01098117_01099160 GPR146 coding downstream 136832 1097258 ~ 1099160 (-)
CI01000046_01074910_01076076 GPER1 coding downstream 159568 1074798 ~ 1076424 (-)
CI01000046_01047300_01066367 UNKL, UNKL.S coding downstream 169625 1047209 ~ 1066367 (-)
CI01000046_00790248_00814884 MKL2B coding downstream 421108 790183 ~ 814884 (-)
CI01000046_01421301_01451701 HS3ST2 coding upstream 179445 1420512 ~ 1451931 (-)
CI01000046_01814833_01858924 NA coding upstream 573737 1814804 ~ 1859010 (-)
CI01000046_01926303_01931836 NSMCE1 coding upstream 685057 1926124 ~ 1932117 (-)
CI01000046_01970499_01979300 NA coding upstream 728924 1969991 ~ 1979300 (-)
CI01000046_02031809_02034289 NA coding upstream 790392 2031459 ~ 2034289 (-)
G195410 NA non-coding downstream 1354 1229564 ~ 1234638 (-)
G195431 NA non-coding downstream 74406 1161299 ~ 1161586 (-)
G195426 NA non-coding downstream 84298 1151374 ~ 1151694 (-)
G195422 NA non-coding downstream 92240 1143514 ~ 1143752 (-)
G195421 NA non-coding downstream 92517 1143085 ~ 1143475 (-)
G195435 NA non-coding upstream 9896 1250963 ~ 1252164 (-)
G195445 NA non-coding upstream 36441 1277508 ~ 1283328 (-)
G195408 NA non-coding upstream 48755 1289822 ~ 1303161 (-)
G195455 NA non-coding upstream 67197 1308264 ~ 1308561 (-)
G195563 NA non-coding upstream 155145 1396212 ~ 1396564 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 455699 774434 ~ 780293 (-)
G195098 NA other downstream 559864 670736 ~ 676128 (-)
G195097 NA other downstream 809666 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 1170081 63153 ~ 65082 (-)
G196463 NA other upstream 927199 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 1625192 2866070 ~ 2867794 (-)
G198265 NA other upstream 2516556 3665243 ~ 3800101 (-)
G199054 NA other upstream 4856292 6097359 ~ 6097674 (-)
G199014 NA other upstream 5123111 6364178 ~ 6375406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025665 ube2ia coding NC_007114.7 CM002887.2 45364849 ~ 45373511 (+)
striped catfish (Pangasianodon hypophthalmus) ube2ia ube2i,ube2ia,LOC105013396 misc NC_047617.1 CM018563.1 17643888 ~ 17693603 (+)
mexican tetra (Astyanax mexicanus) G316831 ube2i,ube2ia,LOC107677193,LOC105013396 unknown NW_019172875.1 APWO02000072.1 1531156 ~ 1554229 (+)