XLOC_009361 (hsph1)


Basic Information

Item Value
gene id XLOC_009361
gene name hsph1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31564137 ~ 31588162 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018397
GTTCTTCTTAATATTGTCATTTCTTGAAGCTCCGTGGGCGCTCTGTATCTGCGCCGAAAGCTCTGGAAGTGTAAACGCCATCAGTGCGCGCTGCTGATGCTGCCGATGGAGACGGAAGTTTCTGGAAAGTTCACTGAAACAACATATAAATGGGTCCCGCGTCCTAAAATAGCATATGCGCTCTGGATTATCTGCCCTTTCATGACTGACGCTTACACACACGGATTTGTTTGTCCATCTGATCTGAGCACATTGCTTGCCGTACCGAGCAGAGTCCGGGATATGGCTGTCGTGGGTTTTGATGTTGGGTTTCAAAACTGCTGTATTGCCGTGGTCAAGAGCGGAGGAATTGAGACAGTGTCCAATGAATTTACAGACAGATGCACGCCATCTGTCATATCGTTTGGTTCAAAGAACAGGGCCATTGGCAATGCTGCAAAAAACCAGATGATAACCAATCCTTCAAGCACCGTCTTTCATTTTAAGAGACTACACAGCAGACTTTATCATGATAAAGTTGTGCAAGCCGAGAAAGCTAATTTACCCTATGATCTGGTACCACTAAATGATGGGAAGGTTGGAGTACAGGTCATGTACCTCGACCAGGAGCACCACTTCAGCATTGAGCAGATCTCCGCTATGCTGTTGACCAAACTGAAAGACATTGCAGAGGCTAACCTGCAGAAGAAAGTGCTGGAGTGTGTCATCtctATCCCCTCATTCTTCACTGATTCAGAACGGAGGTCTGTACTGGATGCTGCCAAGATTGCCGGCTTGAACTGCCTGAAGCTAATGAACGACAGCACTGCAGTGGCGCTAAACTATGGCATATACAAGGAAGATCTGCCAGGCTCTGATGAGAATCCAAAGATTGTGGCGTTCGTGGACTTGGGTCATTCGGCCTTCCAGGTCTCCATTTGTGCATTCAATAGGGGTAAAGTTAAGGTTCTGTCTACTGCCTTTGATCCTTATTTGGGAGGGAAAGACTTTGACCAGAGGCTGGTTGATCACTTCTGTGCTGAATTTAAGTCCAAGTACATGATGGATGTAAAGTCCAAGACCCGAGCTTTGCTGCGACTGACACAAGAGTGTGAGAAACTCAAAAAACTGATGAGCAGCAACTCCACAGAACTCTCCCTCAACATTGAGTGCTTTATAGATGATAAAGACGTATGTGGGAGGATGAACAGGGCCAAATTTGAGGAGATGTGTGCTGACCTGATCGAGAGAGTGAAGTTTACTTTAATGAAGGCTGTAGAACAGGCTGGAGTGCGTCTACAGGACATCAGTGCTGTGGAGATTGTAGGCGGAGCCACACGCATCCCGGCTGTAAAGGCCCAGATCAGCAGCTTCTTCAGGAGGGATGTCAGCACTACATTAAATGCAGATGAAGCAGTGGCCAGAGGCTGTGCATTACAGTGTGCCATGCTCTCTCCTGCATTCAGAGTGCGAGAGTTCTCCATCACAGATGTCATTCCATTCCCCATTTCTCTTTCCTGGTCCAGTGAAGCAGATGAAGGCAAATCGTGTCATGAGATTTTCAGCAGGAACCATCCTTGTCCGTCAGCTAAAATGATCACATTTTACAGGAACAAGCCTTTCATTCTGGAAGCTTTTTATTCAGATAAATCATCCCTGCCCTTTCCTGAGGCCAAGATCGGTGAATATAAAGTGCAGAATATTCAGCCTCAGGAGAACAGAGAAAAGGCGAAGGTGAAGGTCAAAGTTGAAGTAAACAGGAGTGGTGTAGTGAGTGTGAGCTCAGCTGCCGTGGTCCTGAGAGTGAGATCAGATGAGTctgaaatcactgaaataaatgagGATGTTGACAGTCATGATGCCTCTGATGATACTGACGTACAGGACAAGACAGAGGAGGTGAATATTGAGCTCTCAGTAAACAAAGAAAACCTGCCAACAGCACAGTGTCCCCCCATGGAAAAAGAGCAAAATCAAAGAGAAACACTGAGCATGAATGGAGAAGTAAACAGTCACCCTCCTCATGCTAAAAAAGCCAAAATGAAGGTCAAGCATGTCGTTCTGCCCATGGAGGAGACGTTTAACCAGCAGTTGCCAAAGGATCGCCTTAGCGCTTACACGGAGCAGGAAAACAAAATGATTCAGCAAGACCGCCAGGAGAAAGAGCGTAACAATGCTAAGAACGCAGTTGAGGAGAATGTCTACTACTTCCGACACAAGCTGGAGGGCTCCTATCAGACGTTTCTAAACGCTCAAGAACATCAGGCATTCTCTGAGCTTTTAAATGGCACGGAGAACTGGCTGTATGATGAAGGCGCAGACCAAGATAAGCAGACGTACATAAACAGGCTGGCAGAAATACATAAACTGGGTTTGCCTGTGGAAAACAGATACCGGGAGTCCATACGGAGACCCAGAATGTTTGAAGAGCTGTCAGCCAAAATACAGAGCTACATGACCATTGTGGAAGATTATAAGAATGGAAGTGAAAGTTACTGTCATATCGATGCCATGGACATGGACAAGGTCAGAGTGTGTGTTAAAGACACACAAGTATGGATGACAAACATACAGGATTCTCAGGATAAACTCACACCCGATCAGGAACCGGCCATACACAGCACTCAGATCCAGAAGAAATTACAGACACTCAACAATGTTTGTGGGGAGATTGTTTCCAAGCCCAAGCCCAGAGTTGACTCTCCTATGGACGACACTATTCAACCAGAGCgtttacacaaacacaaaagcCCAGAAGATGTGACTATGGACTACACggattttgttcaaaatgaaagaaaaaacaaccATGTCAACATTTAGCAGCTTATTTTGCCAACACAATATGCTTAAATGAAGCTTTTTGTTTGTTACATTCAATGCTATTAGGCACCTTGTATTTAATATCAGATAtgttttttgttgtgtattgtttCATATTCATGAAGCATCAATCTGAAAATCTTTAAAGCTCTTGCTGTGTTTCAGTCTAGCTTCAAAGCTTTCCAAGTAAATTCCAACTCAGTTACTGACTATGAATGCACCTCCATTGACATGCCCataataaaatgtgtgttttaaattaagagctgcatatatgtaaatataacagACAAAAGCAATATATAAAAGAACAGCAAAAAGCTTTGAAATGATCATTTACTAGCACTGattgaaaaacaaaaagcttGCACTGAAACTATGACTCTAAACAAAGTGAAAGCTTGCAATTTCAGAAATGGATGTACAAGGGTTGCTGCTTTACGCTTGACGGTTCCACTTTATTTTCCTTGTGCATTCAATAGGATATGTCATGTTAAATTTAGAATTTATTGACAGTGCTATCTGTGCAGGTGGAAATGCACCACCTGTCTCTGTTGTACATGTTAAAATGATGAACTGATTTGTCGTGCCTGAAACTTTTTGTTGTAAGTTTGAAAATCACaataaaacagttttgaaactA
>TCONS_00018398
ATATGCGCTCTGGATTATCTGCCCTTTCATGACTGACGCTTACACACACGGATTTGTTTGTCCATCTGATCTGAGCACATTGCTTGCCGTACCGAGCAGAGTCCGGGATATGGCTGTCGTGGGTTTTGATGTTGGGTTTCAAAACTGCTGTATTGCCGTGGTCAAGAGCGGAGGAATTGAGACAGTGTCCAATGAATTTACAGACAGATGCACGCCATCTGTCATATCGTTTGGTTCAAAGAACAGGGCCATTGGCAATGCTGCAAAAAACCAGATGATAACCAATCCTTCAAGCACCGTCTTTCATTTTAAGAGACTACACAGCAGACTTTATCATGATAAAGTTGTGCAAGCCGAGAAAGCTAATTTACCCTATGATCTGGTACCACTAAATGATGGGAAGGTTGGAGTACAGGTCATGTACCTCGACCAGGAGCACCACTTCAGCATTGAGCAGATCTCCGCTATGCTGTTGACCAAACTGAAAGACATTGCAGAGGCTAACCTGCAGAAGAAAGTGCTGGAGTGTGTCATCtctgtacgttttttttttttttttttttttgcagcggagCCTTGCGGAGtgcaatcatttattttcttgatttttaatgGCTACCAGAGGCGTGTACTAGAAATAGAGGCGTTTGGTTCATTAGAAATTCTTCCAAAAGATATTTATAGTAGAAATTATGTGTTATAGCCATTTTAGATCTATTAGTAGGATATTTTTGAGAAATGACCTCTTTTTTTCCCCATATAGCAGTACATTTTGCAGGATTTTTTAAATAAGGCTCTGTGATTTCCTCTCTGTGAAAATATGAACAA

Function

symbol description
hsph1 Predicted to enable ATP binding activity. Predicted to be active in cytosol and nucleus. Orthologous to human HSPH1 (heat shock protein family H (Hsp110) member 1).

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120410-4 Predicted to enable ATP binding activity. Predicted to be active in cytosol and nucleus. Orthologous to human HSPH1 (heat shock protein family H (Hsp110) member 1).

Ensembl:

ensembl_id ENSDARG00000019874

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018397 False 3445 mRNA 0.43 18 31564137 31588162
TCONS_00018398 True 828 lncRNA 0.41 4 31585398 31587989

Neighbor

gene id symbol gene type direction distance location
XLOC_009360 AL929092.1 coding downstream 16285 31547734 ~ 31547852 (-)
XLOC_009359 hmgb1b coding downstream 47554 31513065 ~ 31516583 (-)
XLOC_009358 si:dkey-1m11.5 coding downstream 55916 31500785 ~ 31508221 (-)
XLOC_009357 si:dkey-1m11.6 coding downstream 66014 31485877 ~ 31498123 (-)
XLOC_009356 or111-11 coding downstream 144332 31417886 ~ 31419805 (-)
XLOC_009362 CR388091.1 coding upstream 475130 32063292 ~ 32063409 (-)
XLOC_009363 c4 coding upstream 763724 32351886 ~ 32383529 (-)
XLOC_009364 NA coding upstream 825152 32413314 ~ 32433673 (-)
XLOC_009365 frem2b coding upstream 848745 32436907 ~ 32596155 (-)
XLOC_009366 CR855389.2 coding upstream 1045128 32633290 ~ 32635777 (-)
XLOC_009348 AL845428.2 non-coding downstream 201996 31361787 ~ 31362141 (-)
XLOC_009344 AL928851.1 non-coding downstream 248589 31315209 ~ 31315548 (-)
XLOC_009342 AL928851.2 non-coding downstream 264459 31299563 ~ 31299678 (-)
XLOC_009333 AL928870.1 non-coding downstream 551425 31005981 ~ 31012712 (-)
XLOC_009367 NA non-coding upstream 1225574 32813736 ~ 32817995 (-)
XLOC_009370 CT027778.1 non-coding upstream 2074893 33663055 ~ 33663172 (-)

Expression


Co-expression Network