CI01000046_03067420_03068783 (CHST12A, CHST12)


Basic Information

Item Value
gene id CI01000046_03067420_03068783
gene name CHST12A, CHST12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3067367 ~ 3068783 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03067420_03068783.mRNA
AGTATGATGCATGCGGTCTGGGATGTCGATTATGGAATGGAGTTGAGGTGAGAATGGCACTTTCTCAGTCAAAATCAACCAAAATGGGAAAGTCGAGACTGTTCCGCATTTTTATGATCATGGGTGCCGTCTTCATGATCCTTCTTATAATCATATACTGGGATGACGTGGGGGCCTCTAATTTTTACCTGCACACAACCATCTCCGGGCCCCATCCGTCCCGCCTCTCTCCACAGGGTCGTCGTGACCCTGAAAAGAAATTAGAGGAAGACAAAGAGGGCTCTTTCTTGATGGACATAGATGCTTTTGTCAACCAGTTTTTAGAAGGAACCGCAGACCCCACGGAGCAGGTGAGAGGAGAGCCGCCGCCTGGAGACCCTCACAATCAGTCCTCTGAGAAATCAGAAGAGAAATTTGTCCCGAGGCGAGAGTGGAAGATCCATCTGACGCCAATTGACCCCGAGAAAAAACAGAGGCAAGAGAGTAGAAAGCAGCTGATCCAAGATGTGTGCAGTAACGGAAGTTTTTTAGACTTCCCTGGAAAGAACAGGACTTTCGATGACATACCCAATAAAGAGTTGGATCACCTCATTGTTGACGACAGGCATGGAATTATTTACTGTTACGTTCCCAAGGTGGCCTGCACAAACTGGAAGCGCATTATGATCGTTTTGAGCGAGAGCCTGTTATTGGATGGCGTGCCCTACCAAGACCCTCTAGATGTTCCTCAGGAGCTCATCCATAACAGTAGCCTGCACTTCACCTTCAACAAGTTCTGGAAGCGCTATGGAAAGTTCTCCCGGCACCTCATGAAAATCAAGCTTAAGAAATACACCAAGTTTTTGTTTGTCAGGGATCCTTTTGTACGACTGATCTCTGCCTATCGCAACAAATTCGAACAAGAGAACGAGGACTTCTACAAGAGATTCGCTGTTGTCATGCTGAAAAAATACAGCAATTACTCGGATCCCCCGGCGTCAGTCGTGGATGCTTTTGCTGCTGGGATTCGACCTTCTTTCTCAAATTTCGTTCAGTATTTATTGGATCCTAACACAGAGAAAGAGATGCCTTTCAATGAGCACTGGAGACAGATCTATCGTCTGTGCCATCCCTGCCAGATAAATTATGATTTTGTGGGAAAGCTGGAGACCTTGGACGAGGATGCTGAGCATTTGTTGCGGATTCTCCGCGTAGACAATGTCGTCGAGTTCCCGCAAAGTCATCGTAACCGAACGGTCAGCAGTTGGGAGCAGGACTGGTTCGCCAACATACCATTGGAATACAGAAAAGAGCTGTACAGGCTCTATGAAGCCGACTTTAAACTGTTTGGATATTCCAAACCAGAGAATCTGTTACATGAGTGATATTTCGATCATCAGCTTTTCTGGGGTGCTGAAAGGATTCACAGCACAATAAA

Function

symbol description
chst12a Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in female organism; head; notochord; pectoral fin; and pharyngeal arch cartilage. Orthologous to human CHST12 (carbohydrate sulfotransferase 12).
chst12 Enables chondroitin 4-sulfotransferase activity. Involved in chondroitin sulfate biosynthetic process and dermatan sulfate biosynthetic process. Located in membrane.

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K04742 CHST12; chondroitin 4-sulfotransferase 12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03067420_03068783.mRNA True 1417 mRNA 0.47 1 3067367 3068783

Neighbor

gene id symbol gene type direction distance location
CI01000046_02972183_02978771 LFNG coding downstream 88596 2972183 ~ 2978771 (-)
CI01000046_02873360_02887683 SNX8A, SNX8 coding downstream 179684 2872981 ~ 2887683 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 coding downstream 199672 2866070 ~ 2867794 (-)
CI01000046_02480126_02480593 PSMG3 coding downstream 585426 2479876 ~ 2481941 (-)
CI01000046_02458763_02477098 TMEM184A coding downstream 590269 2458472 ~ 2477098 (-)
CI01000046_03080433_03083966 EIF3B, EIF3BA coding upstream 11650 3080433 ~ 3084292 (-)
CI01000046_03095399_03129278 GNA12, GNA12A coding upstream 26170 3094953 ~ 3129652 (-)
CI01000046_03140684_03161621 CARD11 coding upstream 71599 3140382 ~ 3161621 (-)
CI01000046_03606941_03615212 MMD2, MMD2A coding upstream 537934 3606717 ~ 3615212 (-)
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding upstream 566197 3634980 ~ 3641081 (-)
G198020 NA non-coding downstream 9421 3057730 ~ 3057946 (-)
G198014 NA non-coding downstream 17527 3049620 ~ 3049840 (-)
G198013 NA non-coding downstream 17848 3049101 ~ 3049519 (-)
G198012 NA non-coding downstream 18942 3048179 ~ 3048425 (-)
G198002 NA non-coding downstream 50538 3016460 ~ 3016829 (-)
G198044 NA non-coding upstream 113302 3182085 ~ 3211294 (-)
G198190 NA non-coding upstream 329186 3397969 ~ 3398865 (-)
G198264 NA non-coding upstream 474517 3543300 ~ 3543526 (-)
G198281 NA non-coding upstream 482716 3551499 ~ 3552690 (-)
G198307 NA non-coding upstream 483977 3552760 ~ 3554252 (-)
G196463 NA other downstream 898723 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2287074 774434 ~ 780293 (-)
G195098 NA other downstream 2391239 670736 ~ 676128 (-)
G195097 NA other downstream 2641041 407423 ~ 426326 (-)
G198265 NA other upstream 688840 3665243 ~ 3800101 (-)
G199054 NA other upstream 3028576 6097359 ~ 6097674 (-)
G199014 NA other upstream 3295395 6364178 ~ 6375406 (-)
G199130 NA other upstream 3509197 6577980 ~ 6594210 (-)
G199181 NA other upstream 3757902 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025634 chst12a coding NC_007114.7 CM002887.2 41726360 ~ 41732947 (+)