CI01000046_03080433_03083966 (EIF3B, EIF3BA)


Basic Information

Item Value
gene id CI01000046_03080433_03083966
gene name EIF3B, EIF3BA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3080433 ~ 3084292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03080433_03083966.mRNA
ATAGTAAAACGACGCATTTAGCGCATTTGAACCGCAGTGATAAAATTATAAGGACATATACTGCTGTATTACATTAAAATGTCATCTTCCTCCTAAATTTGTGTTGTACGTTAATACTAAACAATCACTAAGAGCCTCCACCCGCTCTCCGCACACATGGTACGGTCCTTCTCTCGCTCGCAGTGGTTGGCGCCGGTTGCTTTGCACATGGCCGAGTGAGAAAAATCTCTGGATTACTGCTGTGAAATTTACCACCGCCTTTTCACTAGCCCATACTGACAGCGATCGATCTCTAAATGCGAGATACGGAGAATATGGAGGCCGAAATGGAGTATGAGGACGGAGAAGAGCCTTCGTTCAGTGATCCGGAGGATTTCGTGGATGACATCAGTGATCAGGAGCTGCTGGGGGATGTTCTCAAGGAGAAACCTCAGGAGGCTGACGGCATCGACTCGGTCATTGTGGTTGATAACGTCCCTCAGGTCGGACCAGATCGTCTGGAGAAACTCAAGAACGTCATCCACAAGATCTTCTCAAAGTTTGGCAGAATCACCAATGAATTCTACCCAGACGCAGATGGAAAGACCAAGGGGTACATTTTCCTGGAGTATTCTGCACCAAGTCATGCTCATGAAGCAGTCAAAAACGCTGATGGCTACAAGCTGGACAAGCAGCACACTTTCCGTGTCAATCTGTTCACTGACTTTGACAAGTACATGTCAATCTGTGATGAGTGGGAAGCTCCTGAGAAGCAGCCCTTTAAAGATTTTGGGAATCTGCGTCACTGGTTAGAGGATCCTGACTGTCGTGATCAGTACAGCGTAATCTATGATTCTGGTGAAAGAACAGGCATATTTGCTAATGATGTCAAGGAGCCAATTGAAGTGGAGGAGAGAGCGCGCTGGACCGAGACATACGTGCGCTGGTCTCCAAAAGGCACCTACCTGGCCACATTCCATCAGAGAGGCATTGCTCTGTGGGGCGGTGAGAAGTTCAAGCAGATCCAGAGGTTCAGTCATCAGGGGGTTCAGCTCATTGATTTCTCTCCCTGTGAGAGATATGTTGTCACGTTCAGCCCTCTTATGGACACTAAAGATGACCCTCAGGCGATTATTATCTGGGATGTTCTGACAGGACAGAAGAAAAGAGGCTTTCACTGTGAAAGCTCTGCCCACTGGCCAATTTTCAA

Function

symbol description
eif3ba Predicted to enable RNA binding activity and translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within heart rudiment development and neural crest cell development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3B (eukaryotic translation initiation factor 3 subunit B).
eif3b Enables RNA binding activity. Contributes to translation initiation factor activity. Involved in several processes, including IRES-dependent viral translational initiation; translational initiation; and viral translational termination-reinitiation. Located in extracellular exosome. Part of eukaryotic translation initiation factor 3 complex.

GO:      GO:0032947, GO:0003676, GO:0033290, GO:0031369, GO:0014032, GO:0075522, GO:0075525, GO:0070062, GO:0016282, GO:0000166, GO:0005654, GO:0005737, GO:0006446, GO:0005852, GO:0001731, GO:0003313, GO:0071541, GO:0006412, GO:0003723, GO:0005515, GO:0006413, GO:0005829, GO:0003743

KEGG:

id description
K03253 EIF3B; translation initiation factor 3 subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03080433_03083966.mRNA True 1189 mRNA 0.48 7 3080433 3084292

Neighbor

gene id symbol gene type direction distance location
CI01000046_03067420_03068783 CHST12A, CHST12 coding downstream 11650 3067367 ~ 3068783 (-)
CI01000046_02972183_02978771 LFNG coding downstream 101662 2972183 ~ 2978771 (-)
CI01000046_02873360_02887683 SNX8A, SNX8 coding downstream 192750 2872981 ~ 2887683 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 coding downstream 212738 2866070 ~ 2867794 (-)
CI01000046_02480126_02480593 PSMG3 coding downstream 598492 2479876 ~ 2481941 (-)
CI01000046_03095399_03129278 GNA12, GNA12A coding upstream 10661 3094953 ~ 3129652 (-)
CI01000046_03140684_03161621 CARD11 coding upstream 56090 3140382 ~ 3161621 (-)
CI01000046_03606941_03615212 MMD2, MMD2A coding upstream 522425 3606717 ~ 3615212 (-)
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding upstream 550688 3634980 ~ 3641081 (-)
CI01000046_03643306_03647935 ARPC1A coding upstream 557890 3642182 ~ 3647935 (-)
G198020 NA non-coding downstream 22487 3057730 ~ 3057946 (-)
G198014 NA non-coding downstream 30593 3049620 ~ 3049840 (-)
G198013 NA non-coding downstream 30914 3049101 ~ 3049519 (-)
G198012 NA non-coding downstream 32008 3048179 ~ 3048425 (-)
G198002 NA non-coding downstream 63604 3016460 ~ 3016829 (-)
G198044 NA non-coding upstream 97793 3182085 ~ 3211294 (-)
G198190 NA non-coding upstream 313677 3397969 ~ 3398865 (-)
G198264 NA non-coding upstream 459008 3543300 ~ 3543526 (-)
G198281 NA non-coding upstream 467207 3551499 ~ 3552690 (-)
G198307 NA non-coding upstream 468468 3552760 ~ 3554252 (-)
G196463 NA other downstream 911789 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2300140 774434 ~ 780293 (-)
G195098 NA other downstream 2404305 670736 ~ 676128 (-)
G195097 NA other downstream 2654107 407423 ~ 426326 (-)
G198265 NA other upstream 673331 3665243 ~ 3800101 (-)
G199054 NA other upstream 3013067 6097359 ~ 6097674 (-)
G199014 NA other upstream 3279886 6364178 ~ 6375406 (-)
G199130 NA other upstream 3493688 6577980 ~ 6594210 (-)
G199181 NA other upstream 3742393 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025633 eif3ba coding NC_007114.7 CM002887.2 41714966 ~ 41724932 (+)
bowfin (Amia calva) AMCG00018051 eif3b,eif3ba coding CM030135.1 CM030135.1 490119 ~ 499466 (+)