CI01000046_03635227_03641081 (ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L)


Basic Information

Item Value
gene id CI01000046_03635227_03641081
gene name ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3634980 ~ 3641081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03635227_03641081.mRNA
ATGGCTTATCACAGTTTTCTTCTTGAACCTATCAGCTGCCATGCCTGGAACAAGGACCGAACTCAAATAGCACTGTGTCCTAATAACCATGAAGTCCATATCTACAAGAAGGACGGAAACAACTGGAACAAAATCCATGTGCTGAAGGAGCACAATGGCCAGGTTACTGGCATTGACTGGGCCCCAGAGAGCAATCGCATCGTCACCTGCGGCACCGACCGTAATGCGTACGTCTGGACCCTAAAGGGAGATGTATGGAAGCCCACCCTGGTCATTCTCAGGATCAACCGTGCCGCCCGCTGTGTGAAATGGTCTCCTAAAGAAAACAAGTTTGCTGTGGGCAGTGGCTCACGTCTGATCTCAGTGTGCTATTTTGAGCAGGAAAATGACTGGTGGGTGTGCAAGCACATTAAGAAGCCTATCCGCTCCACAATCCTTTGTTTGGACTGGCACCCCAATAACGTCCTTTTGGCAGCTGGATCTTGTGACTTTAAATGCAGGATCTTCTCTGCTTACATAAAGGAAGTAGAAGAGAAGCCTGCTCCAACACCATGGGGCTCTAAAATGCCCTTTGGAGAGGTCATGTTCGAGTCTACTGGTTCTTCGGGTTGGGTGCATGGCGTCTGCTTCTCGGACAGCGGGAATCGTGTGGCCTGGGCCAGCCACGACAGCACCGTGGCAGTGGCCGAGGGAGGAAAGACTGCTGTCTGCACCAGTCTGACTTCAGAAACCTTGCCTCTTCTGTGCGTGACTTTCATTACTGAGAACAGCCTAGTGGCAGCTGGCCATGACTGCTACCCTGTGTTGTTTGTCTACGATTCAAACAATGCAGCCTTGTCTTTTGGAGGAAAACTTGACGTGCCCAAACAGAGTGCTCAGAAGGGCATGACAGCCAGAGAACGCTTCCAGAACTTGGATAAGAAAGCCACCACAGACAGCAAGGAAGCAGTCCTTGAGTCTGTGCACAAGAACAGCATCAGCCAAATCTCAATCCTTAATGGGGGAAAAGCCAAGTGTGCTAAATTCTGCACCACTGGTATGGATGGAGGCATGGCTATTTGGGATGTAAAGACCCTTGAATCTGCAATGAAAGACCTCAAGATTGTCTAGACAGCAGACTCCAGAACAAAATGTCTGCAGTTCAAATTTGCTTGCTTTTTAATAGGCTTATCCTTTTTAATGCAGTTTGTCTGTACGTTTTTACAAGATTATGTTTTGATGTGTTAAAAGTTTAAGGATTTTATTCTGATAAAATTCAGAAATCTGGTTCTGGATGAACCAAAAACTGAATTTATATGCTGGTCATAAATTGCTTTTCTTTAATTAGTGCAGGTACTTTGCATTGGATTTTAATAAA

Function

symbol description
arpc1b Predicted to enable actin filament binding activity. Acts upstream of or within T cell differentiation and thrombocyte differentiation. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Is expressed in blood; blood island; pectoral fin musculature; pharyngeal arch 3-7 skeleton; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in gastritis; immunodeficiency 71; and myelodysplastic syndrome. Orthologous to human ARPC1B (actin related protein 2/3 complex subunit 1B).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03635227_03641081.mRNA True 1357 mRNA 0.46 9 3634980 3641081

Neighbor

gene id symbol gene type direction distance location
CI01000046_03606941_03615212 MMD2, MMD2A coding downstream 19768 3606717 ~ 3615212 (-)
CI01000046_03140684_03161621 CARD11 coding downstream 473359 3140382 ~ 3161621 (-)
CI01000046_03095399_03129278 GNA12, GNA12A coding downstream 505328 3094953 ~ 3129652 (-)
CI01000046_03080433_03083966 EIF3B, EIF3BA coding downstream 550688 3080433 ~ 3084292 (-)
CI01000046_03067420_03068783 CHST12A, CHST12 coding downstream 566197 3067367 ~ 3068783 (-)
CI01000046_03643306_03647935 ARPC1A coding upstream 1101 3642182 ~ 3647935 (-)
CI01000046_03761959_03768003 FSCN1, FSCN1A coding upstream 119370 3760451 ~ 3768116 (-)
CI01000046_03777712_03789322 NA coding upstream 136510 3777591 ~ 3789340 (-)
CI01000046_03825822_03873637 TNRC18 coding upstream 184084 3825165 ~ 3874959 (-)
CI01000046_03920813_03930435 SLC29A4 coding upstream 279154 3920235 ~ 3930634 (-)
G198289 NA non-coding downstream 68825 3565944 ~ 3566155 (-)
G198318 NA non-coding downstream 74440 3560231 ~ 3560540 (-)
G198307 NA non-coding downstream 80728 3552760 ~ 3554252 (-)
G198281 NA non-coding downstream 82290 3551499 ~ 3552690 (-)
G198264 NA non-coding downstream 91454 3543300 ~ 3543526 (-)
G198265 NA non-coding upstream 24162 3665243 ~ 3800101 (-)
G198291 NA non-coding upstream 78938 3720019 ~ 3721789 (-)
G198286 NA non-coding upstream 249939 3891020 ~ 3891811 (-)
G198404 NA non-coding upstream 251367 3892448 ~ 3892862 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 767186 2866070 ~ 2867794 (-)
G196463 NA other downstream 1466336 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2854687 774434 ~ 780293 (-)
G195098 NA other downstream 2958852 670736 ~ 676128 (-)
G195097 NA other downstream 3208654 407423 ~ 426326 (-)
G199054 NA other upstream 2456278 6097359 ~ 6097674 (-)
G199014 NA other upstream 2723097 6364178 ~ 6375406 (-)
G199130 NA other upstream 2936899 6577980 ~ 6594210 (-)
G199181 NA other upstream 3185604 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location