CI01000046_03643306_03647935 (ARPC1A)


Basic Information

Item Value
gene id CI01000046_03643306_03647935
gene name ARPC1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3642182 ~ 3647935 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03643306_03647935.mRNA
ATGGAGTCAGACTTGAATGAAATGGAGATCCAGCTGGACAATGGCTTTAAGAACAATAGTGAGCAGGAAGATCTTCAAGAGACTGTAACAGCAGAGCTTTGGCCCCACTTGTGTATGAAATTGCCGAAATCAGGGAGCGAGAGAGCAGTCGGAGTGAATTCGTGTCGACTGTCCAGAGTCCGCGAATTCAAGTCCGTCCACCAGCTGAACAACCGAGAGCGAACATCCTTACAAATATTACCACAAGAAGCGGAACATCGTTTCAGGCTGAGGTACAAACTGATTGAAGATAATGTCACTCCACCAGTTTTTGTTGGAACCCATCACATGCCACGCATGGAACCGGGACAGGACCCTCCAAACAATCACGAAGTCCATATATACAAGAAAAGTGGAAATCAGTGGGTGAAAGCTCAAGAACTAAAAGAACACAATGGGCACATCACAGGCATTGACTGGGCTCCTAAAAGTGATCGTATTGTGACTTGTGGAGCGGACCGGAATGCTTATGTATGGAGTCAAAAGGACGGCGTGTGGAAACCCACCCTTGTTATTCTCAGGATCAACCGTGCTGCCACGTTTGTAAAATGGTCTCCACTGGAGAACAAGTTTGCAGTGGGGAGTGGAGCACGACTCATATCCGTTTGCTACTTTGAGTCTGAAAATGATTGGGTATTTTCTGCATACATCAAGGAGGTGGATGAGAAACCAGCTCCAACCCCATGGGGGTCCAAGATGCCCTTTGGGCAGGTGATGGCAGAGTTTGGCGGGGCAGGAAGTGGAGGATGGGTTCACAGCGTCTGTTTCTCAGCCAGTGGGAACAGACTGGCTTGGGTCAGCCATGACAGCACTGTCACTGTAGTGGACCCCACAATAAGCTCAACGCCAAGTCAGCTGAAGACAGAATTCCTTGCCCTTTTGAGTGTGACTTTTGTTTCTGAGAACAACATTGTGGCAGCAGGTCACGACTGCTGCCCTATGCTGTTCAGTTTTGATGATGGTGGAAACTTGACCTTCATATCCAAGTTGGACATTCCAAAGCAGAGCATCCAGCGCAACATTTCTGCCATGGAGCGCTTCCGCAACATGGACAAGAGGGCCACCACTGAGGACCGCAATAGCACTCTAGAAACCCTGCATCAGAACAGCATCACGTAGGCCAAATGATTTAAAAATTGTATATAAACATTACCGTTCAAGAGATTGGGGTAAGGTTTTTTTTTTTTTTTTAATGAATTCAATAAATTAAAATGAATTTGATCAAAAGTGAAAGACTTAGAAAAGATTTATATTTCAAACGCTGCTCTTTTGAGCTTTCTATTCATAAAATAATTCTAAAAAAACTATCACAGTTTCCAAAAAAATATTAAGCAGCACAACTGTTTTCAACATTGATAATAAGAAATGTTTCTTGTAATGATGCTGAAAATTCAGCTTTGCTATCAAAAGAATAAATTACATTTAAAATATATTTCAATACAAAACCATTATTTTAAATTGTAATTATTTTACAATATTACTGGTTTTACTGTAGTTTTGATCAAATAAATGCAGCCTAGGTGAGCATAAGAGACTTTCTTTCAAAAATATTTTAAAAAGTCATACAGACTCCAAACTTTTGAACTGTATATATAAATTATTATTAATTTTGTTTTTTTGTAATTGTGTTCTAATTTTTATTTTTACTTTGCAGCCAAGTGTCTATATATGAAGGAGACAAAAGAGATTGTCGCAAATTCTGCACTACGGGAATTGACGGAGCAATGACCATATGGGATTTCAAGGTTTGTATTTGTATTTTGTAACTTTTATGCCATAGATTTGCTTCCATTTTATGGCTTAAGTCACAGTTAACCTGATTTATGACCATGTTTGCTTAATTCTTTCCACAGACCTTAGAGTCTTCAATCCAGGGCCTGCGGATCATGTAAAACTCGCACCGATCTAGCATGACACAGCACAAGCAATGCAGCTTGAAGACTAACAAGGAGATTTCCGATAACACTTCTGAAAGTTTTTAAATAAAAAAAAAAAAAAAAAAGCACTGAGCAGTGGTGTGAACTGATGTGTGACACTCTTAAAAATGGAAAAAACACTAATGGAAAAGGGGGTTAGGATCTTTGTTTTCTTTTTGTTTGTTTTTTTAAGAAAAAAAAATCTATGCCAAAGCTGGCACCCCAGCAGTGTGTTACGGTTGATCAAGATGTTCTGGCTCTCCAGAGAAACTGGAGAGGAGTTAAATTAAAAGGAGAATTTTATGTAAATGGTCTGCTAGAAATAAA

Function

symbol description
arpc1a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

GO:

id name namespace
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis biological_process

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03643306_03647935.mRNA True 2282 mRNA 0.40 8 3642182 3647935

Neighbor

gene id symbol gene type direction distance location
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding downstream 1101 3634980 ~ 3641081 (-)
CI01000046_03606941_03615212 MMD2, MMD2A coding downstream 26970 3606717 ~ 3615212 (-)
CI01000046_03140684_03161621 CARD11 coding downstream 480561 3140382 ~ 3161621 (-)
CI01000046_03095399_03129278 GNA12, GNA12A coding downstream 512530 3094953 ~ 3129652 (-)
CI01000046_03080433_03083966 EIF3B, EIF3BA coding downstream 557890 3080433 ~ 3084292 (-)
CI01000046_03761959_03768003 FSCN1, FSCN1A coding upstream 112516 3760451 ~ 3768116 (-)
CI01000046_03777712_03789322 NA coding upstream 129656 3777591 ~ 3789340 (-)
CI01000046_03825822_03873637 TNRC18 coding upstream 177230 3825165 ~ 3874959 (-)
CI01000046_03920813_03930435 SLC29A4 coding upstream 272300 3920235 ~ 3930634 (-)
CI01000046_03946243_03948935 CPSF4 coding upstream 298295 3946230 ~ 3949544 (-)
G198289 NA non-coding downstream 76027 3565944 ~ 3566155 (-)
G198318 NA non-coding downstream 81642 3560231 ~ 3560540 (-)
G198307 NA non-coding downstream 87930 3552760 ~ 3554252 (-)
G198281 NA non-coding downstream 89492 3551499 ~ 3552690 (-)
G198264 NA non-coding downstream 98656 3543300 ~ 3543526 (-)
G198265 NA non-coding upstream 17308 3665243 ~ 3800101 (-)
G198291 NA non-coding upstream 72084 3720019 ~ 3721789 (-)
G198286 NA non-coding upstream 243085 3891020 ~ 3891811 (-)
G198404 NA non-coding upstream 244513 3892448 ~ 3892862 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 774388 2866070 ~ 2867794 (-)
G196463 NA other downstream 1473538 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2861889 774434 ~ 780293 (-)
G195098 NA other downstream 2966054 670736 ~ 676128 (-)
G195097 NA other downstream 3215856 407423 ~ 426326 (-)
G199054 NA other upstream 2449424 6097359 ~ 6097674 (-)
G199014 NA other upstream 2716243 6364178 ~ 6375406 (-)
G199130 NA other upstream 2930045 6577980 ~ 6594210 (-)
G199181 NA other upstream 3178750 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025624 arpc1a coding NC_007114.7 CM002887.2 40796110 ~ 40804455 (+)
bowfin (Amia calva) AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding CM030135.1 CM030135.1 13885780 ~ 13902661 (+)