CI01000046_03761959_03768003 (FSCN1, FSCN1A)


Basic Information

Item Value
gene id CI01000046_03761959_03768003
gene name FSCN1, FSCN1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3760451 ~ 3768116 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03761959_03768003.mRNA
AGGTTGCAAAGAGAGAGGCGCGCGCACGCTCGCTCCTTTAAACAAAGAGACCCATCAACATCATCCACAGTGCACCAGCAGAACCCATTCCAGGAACTCCAACAACTGCAAACATGACTGCAAACGGAACCAGCGACATGCTTAAAATCCAGTTCGGATTGATCAATTGTGGGAACAAGTACCTCACGGCTGAAACGTTCGGCTTCAAGATCAATGCATCAGCCACCAGCATGAAGAAGAAACAGATCTGGACCTTGGAGCAGGACGGCGATGACTCAAACATGTTCTACCTGAAGAGCCATCTGGGGAGGTACATCGCAGCTGACAAAGACGGCAACGTCACGGGTGACAGCGAGACCCCGAGCGAGGATTGTCGGTTCATAATCACTGCACATGATGATGGGCGCTGGTCTCTGCAGTCTGAGCCTCACAAGCGCTACCTGGGCGGCACCGAGGACAGAATTACCTGCTTCGCCCAGACCATCTCCATCGCTGAGAAATGGAGCGTGCACATTGCCATGCACCCGCAGGTCAACATCTTCAGCGTCACCAGGAAAAGATACGCGCACCTGAGCTCCGAGCAGAACGAGATCGCCATTGACCGAGATGTTCCCTGGGGCGTTGATTCCCTCATCACCTTGGTCTTCCAGGACCAGAGGTACCACTTACAGACCTCCGACAACCGCTTCCTGAAGAACGACGGAAGCCTGTCCCAGAAGCCCGATAAGACCACGGGATACACGCTGGAGTTCAGGTCCGGGAAGGTTGCCTTCAGAGACTGCACTGGGAAGTACCTGGCTCCCTCTGGCCCCAGTGGAACCATGAAGTCCGGCAAGAGTTCGAAGGTTGGCAAAGACGAGCTTTTTGTTCTGGAGCAGAGCCACCCTCAAGTGGTCCTCACCGCTGGCAACGACAGGAATGTGTCCACCAGGCAAGGCATGGACCTCTCTGCCAACCAGGATGAAGAAGGTGACCAGGAGACCTTTCAGATGGAAATCAGTAAGGACACGAAGAAGTGTGCCTTCAGGACCTGCACTGGCAAATACTGGACCCTCACAGCCAATGGTGGCCTCCAGTGCACTGCTTCTACTAAGTCTGCTAACTGCTATTTTGACATTGAGTGGCGTGGGAAGAAGATAACCCTGCGTGCCACCAATGGAAAATATGTGGCTGCCAAAAAGAATGGACAGCTGGCTGCCACTATTGACTCAGCAGGCGAGACCGAGGAGTTCCTGATGAAGCTCATCAATAGACCCCTCATCGTGCTGAGAGGGGAGCATGGCTTCATTGGCTGCAGGAAGGTGACAGGCACCCTAGACTCCAACCGCTCCTCATATGATGTCTTTGGGTTGGAGTTTAGAGATGGAGCCTACAGCTTACAAGACTCCACAGGGAAGTACTGGATGGTGGGCAGTGAATCGAACGTGATCAGCAGTAGCGACACCCCGGTGGACTTCTTCCTCGAGTTTTGCGACTACAACAAAGTGGCCATCAAGTCAACCGAGGGGAAATATCTCAAGGGCGATCACGCAGGTGTTCTGAAGGCCAACGCCGATGATCTGGACGGCTCCACTGTGTGGGAGTACTAAAAGCACTTAAGTAACCACTGTGGCTTTTTCTTTCCGGCTTTTTTTCCTTTCTGTTAAGCATTTTGAATAAGGTTTTTGAATATGAGTGAGCACACGGGCCAATAGCAGAGAGAAACCTAAAGGTGAAGGGGCTTACTTTAGTCACGTATACTCGATTCTGTCTAAATACTCCAGCGTTTGTGTGCCACAACATTACCGCAGTGGCGTGTGGCCACATCTGGGACTTCTGGGACTTAACTGGCATCCAAATTTGTGTTGTGTGGTTAAAGCACATCTCATGTCATCTCTTAATCTGCCCTAATATTTGGCTGGCACTCGAATCGGTCCACTCTCTGGAAGATCGACTATGCGGGTGCCACATGTCGAGCCACAGGATTTTGATGTACCAGATTGTAGCGTGATCCCTCTTCCTTGTCTTTGCACAGTCCTGTATGAGCCTCACACTCTTAATATTAACACATAGCGAAATATGTTAAAGAAAACCTTGTGACTGTGAGCTATTGATGATGTAATGCCTCCCACTGTATTGCCAGTCATAAGTACCTTCCCTCATGATCCGAGGACAAAGGCAATATTTACAGGTAAATGTATGAATGTTGAGTTTCTGTTGTTTTTTTTTCCGTTCCATACACTTGACAGAGTTATGAAGGAAGCTCTTGGACCACTGAAACGGCGATGAGCTACACTGTTTTGTTTTTGTATTTGAAGTACGGCAGTGCTTGTACTGCCTCACTATCTGTGCCATTAGAAATAATTTTAATGTTTAAAAAAAAAAAAAAAGAGGAAAAACCAAGAGAACTGGATTGGTACCATACAGTCCCTCATCTCAAAATTAGGGATGTGCCTGGAATTGTAAATGGGTGGGGGGGGGAAGAAATGGATATTAAAAATGGAAATGTTTTCTGCAACTCAAAAGTGAAGTCATCTGTAATTTGTGTGCCGTGCAGCTGTGGGCGTGATGATACCGACGTCAGGTATGTTGTTGCAGGTTCAACACAGTATTTATGGTAAATTAAACCACTTTTCCCTCTTGATCCTGACAAATCCCAAAAGAATGGCGAGTCTGCGTTTACTGGACTCGTGCAGTGGTCTGATCTGGAAAAGTCACTAGAAAGGTCACCAAACACTTTTGTTGTAGTTTTTGAGAAGGCACAGACATTATCATAAACCTTGTTCCATTATACGCATTATTACAGTCCATTAACACCATACACAAAATTGACTGATTTAAAGATTTAAACTGGTGCTTAATTAGATTTCAGGTATGCATTAAACTAACAGAGCCACTTTGAGTGGCAAAACTGCTCATTATTTAAGAAAGCTTGAATATTGATCTCACATTGCTAAGGGAATGATAATGACTGTGCCTTTGAAGGCCATTATGGGGGGGGGGAAGACATTCCACACCTATACTTTGTAAAATCTTTACAAATGTCTTTTTATATTGTTTTGATATTATGGTTATGTTTCCTCATGTGCCATGGGTACAAATGAAATCTGGAAATAAA

Function

symbol description
fscn1a Enables actin filament binding activity; protein-macromolecule adaptor activity; and signaling receptor binding activity. Acts upstream of or within several processes, including animal organ development; epiboly; and pharyngeal system development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including lamellipodium; microvillus; and ruffle. Is expressed in several structures, including head; mesoderm; nervous system; neural crest; and neural plate. Orthologous to human FSCN1 (fascin actin-bundling protein 1).
fscn1 Enables actin filament binding activity and drug binding activity. Involved in several processes, including microspike assembly; positive regulation of cellular component organization; and regulation of plasma membrane bounded cell projection assembly. Located in several cellular components, including actin cytoskeleton; microspike; and ruffle. Biomarker of cholangiocarcinoma; common bile duct neoplasm; pancreatic cancer; and pancreatic ductal carcinoma.

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K17455 FSCN2; fascin2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03761959_03768003.mRNA True 3097 mRNA 0.47 5 3760451 3768116

Neighbor

gene id symbol gene type direction distance location
CI01000046_03643306_03647935 ARPC1A coding downstream 112516 3642182 ~ 3647935 (-)
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding downstream 119370 3634980 ~ 3641081 (-)
CI01000046_03606941_03615212 MMD2, MMD2A coding downstream 145239 3606717 ~ 3615212 (-)
CI01000046_03140684_03161621 CARD11 coding downstream 598830 3140382 ~ 3161621 (-)
CI01000046_03095399_03129278 GNA12, GNA12A coding downstream 630799 3094953 ~ 3129652 (-)
CI01000046_03777712_03789322 NA coding upstream 9475 3777591 ~ 3789340 (-)
CI01000046_03825822_03873637 TNRC18 coding upstream 57049 3825165 ~ 3874959 (-)
CI01000046_03920813_03930435 SLC29A4 coding upstream 152119 3920235 ~ 3930634 (-)
CI01000046_03946243_03948935 CPSF4 coding upstream 178114 3946230 ~ 3949544 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding upstream 183065 3951181 ~ 3953043 (-)
G198291 NA non-coding downstream 38662 3720019 ~ 3721789 (-)
G198289 NA non-coding downstream 194296 3565944 ~ 3566155 (-)
G198318 NA non-coding downstream 199911 3560231 ~ 3560540 (-)
G198307 NA non-coding downstream 206199 3552760 ~ 3554252 (-)
G198281 NA non-coding downstream 207761 3551499 ~ 3552690 (-)
G198286 NA non-coding upstream 122904 3891020 ~ 3891811 (-)
G198404 NA non-coding upstream 124332 3892448 ~ 3892862 (-)
G198405 NA non-coding upstream 125489 3893605 ~ 3893934 (-)
G198406 NA non-coding upstream 127420 3895536 ~ 3897457 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 892657 2866070 ~ 2867794 (-)
G196463 NA other downstream 1591807 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2980158 774434 ~ 780293 (-)
G195098 NA other downstream 3084323 670736 ~ 676128 (-)
G195097 NA other downstream 3334125 407423 ~ 426326 (-)
G199054 NA other upstream 2329243 6097359 ~ 6097674 (-)
G199014 NA other upstream 2596062 6364178 ~ 6375406 (-)
G199130 NA other upstream 2809864 6577980 ~ 6594210 (-)
G199181 NA other upstream 3058569 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025621 fscn1a coding NC_007114.7 CM002887.2 40576447 ~ 40589489 (+)
bowfin (Amia calva) AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding CM030135.1 CM030135.1 13639723 ~ 13649092 (+)