CI01000046_03777712_03789322


Basic Information

Item Value
gene id CI01000046_03777712_03789322
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3777591 ~ 3789340 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03777712_03789322.mRNA
AAACTTAGTCATCAAAGCATGCGTCTCATTCATTGCACACTCGGCTTGTGTTTTGCTGGGACTCCGAAGCAACTGAGGTCTCTTAAAGGAGTTTGGGGTCGCTTGTCACTTCCTTCAGCTGGATTTGCGAGAGGAAATGGCATTGTGTTGCAATACAAGTCATTCATCTTCAGAACTGACTTGTGGAAACAGCTTTTGGGTTACGGGGAGAATTTGTTCAAGCTTGAGCTGAATCTTCCATATTGTGACCTACTTTTTGACTGTAATGCAACCCGCTTTTCACACGCCCTCTCTGCAGCTTCAAGGACATGCATTCCAGCTGCTCGAATCCTGTTCCTCATCCCTCCGACACACTCTGCACATGAAGATCAATGGAGCCAAGGGCAGCGTGTAAGGGGATCCAGGGCCAAGGAGGAGATCAGAGTTGTGTTTTATTTGTTCTGTGGCACAGCCCCGTTTGACTTGATCCTCTCCCGTTTCATTCATCCGGAAAATCTGCTGTGTGTGAGTGAAAACTGGGGGAGTGGGTCTCATTCGATACTCGGATGTAATGAGGAGCTGCCAGGTCTGACTGACCTATATCTGTCTGCTCGGAGGGTAATCTCTAGCGCTCTCATGGCGCTCTCTGCTGCCTGCTGTCTCAGCGCTGACGGGCTCAGACGCACTCACGCCACACTCTGAGCCCAGGAGCCCCTGCTGCAGATGTAGGGCAGCCCCGTCAGTTATTCAGCACTTCAGAGTACTGCGCCGCTGCAGTCTGGGTGGAGGGGCTAACCCACTGCTGCTGGAGTGATGAATTAAA
>TU225084
GCATGCGTCTCATTCATTGCACACTCGGCTTGTGTTTTGCTGGGACTCCGAAGGTGTGCGACTCTTGCCTTCAACTGAGGTCTCTTAAAGGAGTTTGGGGTCGCTTGTCACTTCCTTCAGCTGGATTTGCGAGAGGAAATGGCATTGTGTTGCAATACAAGTCATTCATCTTCAGAACTGACTTGTGGAAACAGCTTTTGGGTTACGGGGAGGTAAACCCCTCTCTGCTGTTGATTATTGACTGAACCGGTGTCATGTTTAAGATTGAGAGACACAAAAGATTTCCCCTCTCCCTTTGGCCAAGAACACAAAAGCAAGTGACCACATTTGCCAATAAAGGTCCAGTTTGAGTTATGTTTAGGTCTCAGCATGTTAGGGTTATGGTGTTGTGGCAGTTGACAGCTGTCCTTTAGAGGGGAAAATGATATGCCCATATTTACTCAAAAGATTTGTTAGGATGGATATGGTTGATATCCATGGTAATCATCAACTTGATGTTGTAGGATAAAACTGTGGTTTTTACTTGCCCATGTCAAAGTCTACTGTAATGGAGGCACAGTAAAGACATTCCCTGAACACTCACTAGAATTACCTGCAGCTCTTATGTAAGTAAATCTTATTGGCTCATGGAAAGCTGACCCTGATGACCCTGTAAATAAGATTTAAGCACTTGTATCAGTCAACAACCACTCAAATGTGCATTAACCATTTAATGTATGTGAGCAAAATGTACAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03777712_03789322.mRNA False 802 mRNA 0.51 5 3777591 3789340
TU225084 True 737 lncRNA 0.42 2 3788510 3789324

Neighbor

gene id symbol gene type direction distance location
CI01000046_03761959_03768003 FSCN1, FSCN1A coding downstream 9475 3760451 ~ 3768116 (-)
CI01000046_03643306_03647935 ARPC1A coding downstream 129656 3642182 ~ 3647935 (-)
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding downstream 136510 3634980 ~ 3641081 (-)
CI01000046_03606941_03615212 MMD2, MMD2A coding downstream 162379 3606717 ~ 3615212 (-)
CI01000046_03140684_03161621 CARD11 coding downstream 615970 3140382 ~ 3161621 (-)
CI01000046_03825822_03873637 TNRC18 coding upstream 35825 3825165 ~ 3874959 (-)
CI01000046_03920813_03930435 SLC29A4 coding upstream 130895 3920235 ~ 3930634 (-)
CI01000046_03946243_03948935 CPSF4 coding upstream 156890 3946230 ~ 3949544 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding upstream 161841 3951181 ~ 3953043 (-)
CI01000046_03967726_03970443 NA coding upstream 178117 3967457 ~ 3970713 (-)
G198291 NA non-coding downstream 55802 3720019 ~ 3721789 (-)
G198289 NA non-coding downstream 211436 3565944 ~ 3566155 (-)
G198318 NA non-coding downstream 217051 3560231 ~ 3560540 (-)
G198307 NA non-coding downstream 223339 3552760 ~ 3554252 (-)
G198281 NA non-coding downstream 224901 3551499 ~ 3552690 (-)
G198286 NA non-coding upstream 101680 3891020 ~ 3891811 (-)
G198404 NA non-coding upstream 103108 3892448 ~ 3892862 (-)
G198405 NA non-coding upstream 104265 3893605 ~ 3893934 (-)
G198406 NA non-coding upstream 106196 3895536 ~ 3897457 (-)
G198407 NA non-coding upstream 108648 3897988 ~ 3898214 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 909797 2866070 ~ 2867794 (-)
G196463 NA other downstream 1608947 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2997298 774434 ~ 780293 (-)
G195098 NA other downstream 3101463 670736 ~ 676128 (-)
G195097 NA other downstream 3351265 407423 ~ 426326 (-)
G199054 NA other upstream 2308019 6097359 ~ 6097674 (-)
G199014 NA other upstream 2574838 6364178 ~ 6375406 (-)
G199130 NA other upstream 2788640 6577980 ~ 6594210 (-)
G199181 NA other upstream 3037345 6826685 ~ 6830453 (-)

Expression


Co-expression Network