CI01000046_03946243_03948935 (CPSF4)


Basic Information

Item Value
gene id CI01000046_03946243_03948935
gene name CPSF4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3946230 ~ 3949544 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03946243_03948935.mRNA
ACTGTCAGCACTCTTTTATAATACAATTGTTTGGCACTGCATGGCGCTAGTGACTAAAGAAGACATTTTAATCAACAACCAACACACTGATCAAGACCAGCATTTCGAATAATCTTTGTGGATTATGTCGCCCAAGTCGCCATCTAACAACAAATCACCAGTAGTCATTATCACGTTTTTTATATTAATAATTATATATTAATAAGGCGAAAATACTCATTTTAAGAAATATGTTTTTAAAAAATAATGCATTCGCGCGTTCCCAGAAACCTCGATTCTGTTGTAATCGATTATACGGCCTGGAGTTCGTGGGTCAGGGGTCACTCTTGAGCAGCGCTGTTGAAGCAGACGATTCTAAAATCAACTGTTTATTTACAATGTTTATCTCTTTTACCGATCCACTCATGCGCTACATTAAAAGCCGTTTACTCAATTAATACATCTGCGTACTTTTTCGCTATTCTCTCTTTTTACGTCTTGTATTAAACCTGATCAAAGGCAGACTGATAAGTTGTTAGCTATCAAGACTTCTTTTAGTTTTCTGATTAAGTGTTATAACGAAAAGAGTTTCAGTTGCTGGTTAAAAAATATAAAGAACATAATACCAAAATGCAGGAATTAATCGCAAATGTCGATCACCTCAAGTTTGATCTAGAAATTGCTGTAGAACAACAATTAGGCGCTCAACCATTGCCATTTCCAGGAATGGATAAATCTGGCGCTGCTGTATGCGAGTTCTTCATGAGAGCTGCCTGTATAAAAGGCATGTATAGCAAAAGCTTGTTTAAGGGGAGTGCAGTAACAAAGAGTGTCCATTCTTGCACATCGATCCAGAATCTAAGATTAAAGATTGCCCATGGTATGATAGAGGTTTTTGTAAGCATGCAGCAAAACATGCAGCCCATAAACAGATCATCACAGTCACTCATCCAATTAACCAACCCCAATATCAACAACAACCACCAGAGAATTCCAAATGCTGTTGGGATAATGCATTCTAACAGCATGGGTGGACCTCGCGGTCCTCGTCCACTGGACCAAGTTACGTGTTACAAGTGTGGTGAGAAGGGCCATTACGCAAACAAATGCACAAAAGGACACCTGGCGTTTTTGAGTGGACAGTAGTTTTCTGAATAAA

Function

symbol description
cpsf4 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be located in nucleus. Is expressed in unfertilized egg. Orthologous to human CPSF4 (cleavage and polyadenylation specific factor 4).

GO: NA

KEGG:

id description
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03946243_03948935.mRNA True 1138 mRNA 0.39 5 3946230 3949544

Neighbor

gene id symbol gene type direction distance location
CI01000046_03920813_03930435 SLC29A4 coding downstream 15596 3920235 ~ 3930634 (-)
CI01000046_03825822_03873637 TNRC18 coding downstream 71271 3825165 ~ 3874959 (-)
CI01000046_03777712_03789322 NA coding downstream 156890 3777591 ~ 3789340 (-)
CI01000046_03761959_03768003 FSCN1, FSCN1A coding downstream 178114 3760451 ~ 3768116 (-)
CI01000046_03643306_03647935 ARPC1A coding downstream 298295 3642182 ~ 3647935 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding upstream 1637 3951181 ~ 3953043 (-)
CI01000046_03967726_03970443 NA coding upstream 17913 3967457 ~ 3970713 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding upstream 62364 4011908 ~ 4017841 (-)
CI01000046_04021483_04023514 GFER coding upstream 70914 4020458 ~ 4023514 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 176343 4125887 ~ 4128585 (-)
G198438 NA non-coding downstream 30301 3915693 ~ 3915929 (-)
G198435 NA non-coding downstream 33828 3912198 ~ 3912402 (-)
G198413 NA non-coding downstream 41841 3904048 ~ 3904389 (-)
G198412 NA non-coding downstream 43068 3902938 ~ 3903162 (-)
G198410 NA non-coding downstream 46440 3899567 ~ 3899790 (-)
G198417 NA non-coding upstream 33114 3982658 ~ 3997407 (-)
G198423 NA non-coding upstream 40560 3990104 ~ 3991124 (-)
G198429 NA non-coding upstream 42889 3992433 ~ 3994698 (-)
G198426 NA non-coding upstream 61196 4010740 ~ 4011325 (-)
G198459 NA non-coding upstream 78110 4027654 ~ 4027938 (-)
G198265 NA other downstream 146129 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1078436 2866070 ~ 2867794 (-)
G196463 NA other downstream 1777586 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3165937 774434 ~ 780293 (-)
G195098 NA other downstream 3270102 670736 ~ 676128 (-)
G199054 NA other upstream 2147815 6097359 ~ 6097674 (-)
G199014 NA other upstream 2414634 6364178 ~ 6375406 (-)
G199130 NA other upstream 2628436 6577980 ~ 6594210 (-)
G199181 NA other upstream 2877141 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025615 cpsf4 coding NC_007114.7 CM002887.2 40289418 ~ 40295255 (+)