CI01000046_03951775_03952660 (BUD31, BUD31.L, BRAFLDRAFT_113775)


Basic Information

Item Value
gene id CI01000046_03951775_03952660
gene name BUD31, BUD31.L, BRAFLDRAFT_113775
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3951181 ~ 3953043 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03951775_03952660.mRNA
ATCGATTAGCATATAGCCAGCGGGTCCATATTCCTATATTTACACTCAGGCACACAATCAGACACCTAGCCTGATGCAATATGCTAGAAGAGAGAATAACATCACCGCCTCACCATAATAAAACCAACGTTGATATGTGCGTTAGTCAGGATTGCAGTGCAATACATTTTAGCAATGTAATGTCTAATAAAATAACCCTGATAATAATTATAGTTCGTATTTTATGTGTAAAAACAAAGACAGCTCGTTGACGTAACAAGTCATCCTATAAGGACCACTGACGTGACGTCATCTGCTTGGCGACAGAAATCGGGAAAGTTTCTAATGCATCAGCTCGCTGTTGTTAAATAACTGAGACGATCGTATATTGCCTAAATAACATAATGCCTAAGGTGAAAAGGAGTAGGAAACCACCTCCGGATGGTTGGGAGCTCATAGAGCCAACTCTTGATGAACTGGACCAGAAAATGCGCGAAGCTGAAACCGAGCCACATGAGGGCAAACGTAAAGTTGAGTCTCTATGGCCAATCTTCCGACTTCATCACCAACGCAGCCGTTACATTTTCGACCTTTTCTACAAGAGAAAGGCCATCAGTCGAGAGCTTTATGAATATTGCATCAAAGAGGGCTATGCAGACAAAAATTTGATTGCCAAATGGAAGAAACAGGGCTATGAAAATCTGTGCTGTCTGCGGTGCATTCAGACGCGCGACACTAACTTTGGAACAAATTGCATATGCAGAGTTCCCAAGGGCAAGCTTGAAGTGGGTCGTATCATTGAGTGCACTCACTGTGGATGCAGAGGATGTTCTGGATGAGGCAAAGGAGAAACCGCTTACTGGGCTTTGATTTGTGTTTTTAATATACTTAATGGTTTGTCATTACGATTTTGGATCTGTTGAAATCATATGATTGTTTATGTATGTTTTGAATTTTTTTTTATATTAAACTGCTGTATCTTAATCATTCTGGATTAGTGTCCAGTCTCATACTTATGAGTATGAGGGTCTCATACTCATATCTCTCAACTATATATGCATACACACACACATACAATAATACATATATTAAAAAAGAACACTTCAGCATGATCACGTTATTGGTATTACTCGAGTCAGTCCATTCTGCTCTAGAAAGCAAAGAAAGGAGTCCAAGATCTTGTAAAATATGTAAAAATAATAATAATAATTAAAAAAATAAAATAAAGTTGTTTAAGTCTTTCCATTGCTATACAAGAATTATGGATGGATGGACCTTAAATACTTTTCCAGTATGGCAATCAGGTGTTTCACTTGCAATAGACAGGTTTACAAACTTGTGTTCATGTATTTTTCAAGATAATCGGAAGAAGACAAAGAAAATAGATTTGGGGGAAAATAGGGATTTCTTTACAAATAGTTTTAGATAATAAA

Function

symbol description
bud31 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human BUD31 (BUD31 homolog).

GO:

id name namespace
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K12873 BUD31, G10; bud site selection protein 31

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03951775_03952660.mRNA True 1412 mRNA 0.37 4 3951181 3953043

Neighbor

gene id symbol gene type direction distance location
CI01000046_03946243_03948935 CPSF4 coding downstream 1637 3946230 ~ 3949544 (-)
CI01000046_03920813_03930435 SLC29A4 coding downstream 20547 3920235 ~ 3930634 (-)
CI01000046_03825822_03873637 TNRC18 coding downstream 76222 3825165 ~ 3874959 (-)
CI01000046_03777712_03789322 NA coding downstream 161841 3777591 ~ 3789340 (-)
CI01000046_03761959_03768003 FSCN1, FSCN1A coding downstream 183065 3760451 ~ 3768116 (-)
CI01000046_03967726_03970443 NA coding upstream 14414 3967457 ~ 3970713 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding upstream 58865 4011908 ~ 4017841 (-)
CI01000046_04021483_04023514 GFER coding upstream 67415 4020458 ~ 4023514 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 172844 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 182812 4135855 ~ 4185848 (-)
G198438 NA non-coding downstream 35252 3915693 ~ 3915929 (-)
G198435 NA non-coding downstream 38779 3912198 ~ 3912402 (-)
G198413 NA non-coding downstream 46792 3904048 ~ 3904389 (-)
G198412 NA non-coding downstream 48019 3902938 ~ 3903162 (-)
G198410 NA non-coding downstream 51391 3899567 ~ 3899790 (-)
G198417 NA non-coding upstream 29615 3982658 ~ 3997407 (-)
G198423 NA non-coding upstream 37061 3990104 ~ 3991124 (-)
G198429 NA non-coding upstream 39390 3992433 ~ 3994698 (-)
G198426 NA non-coding upstream 57697 4010740 ~ 4011325 (-)
G198459 NA non-coding upstream 74611 4027654 ~ 4027938 (-)
G198265 NA other downstream 151080 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1083387 2866070 ~ 2867794 (-)
G196463 NA other downstream 1782537 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3170888 774434 ~ 780293 (-)
G195098 NA other downstream 3275053 670736 ~ 676128 (-)
G199054 NA other upstream 2144316 6097359 ~ 6097674 (-)
G199014 NA other upstream 2411135 6364178 ~ 6375406 (-)
G199130 NA other upstream 2624937 6577980 ~ 6594210 (-)
G199181 NA other upstream 2873642 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025614 bud31 coding NC_007114.7 CM002887.2 40284598 ~ 40287841 (+)