CI01000046_03967726_03970443


Basic Information

Item Value
gene id CI01000046_03967726_03970443
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3967457 ~ 3970713 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03967726_03970443.mRNA
AGATTTATGGCAGGTGACGTGAAAGGTCTGTCAGGCTGGAGAGCATCGTCTTCAAGCTCATGCATAGCAGATCGTGATCTGGCTCAGTGGACTAACCAGCCCCGCTGCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATCCTCAGTGCACAACATGTTTCTGATGTTTTCAAAATGATATCTTTGTGAAATATTATGCTTTCATCGATGCAGATACTGAGCATGGAAGGATATTTCTGCTGATGTCTCTCTATATACTCCGAGAACATGATTGGCTCACCAGATGTGGTGGCTTTTACCAAAGAAGATGACTTTGGGGACTCGTTCTTGGATCCATTGTCACTTCCAGAGGAGTTTTCTGTGCCTTTGTTTACTCATACTGCCAATGCAAATCCATGGACGAAGACATCCTATGCGAAATTCTCAAAAGATTTCATACTCATCTCTGAATTTTCAGAGCAGGTTGGTCCACAGCCTTTACTCACCATTCCCAATGACCCAAAAGTGTGCGGGACATTTGACCTTAACTACTTCTCGCTGCGCATCATGTCTGTGGACTACCAGGCATCTTTTGTCGGACATCCTCCTGGCAGTAATTATCCAAAGCTCAATTTTGTGGAGGACTCAAAAGTCGTCCTAGGTGATTCCAAGGAAGGGGCTTTTGCCTACGTCCATCATCTGACGCTGTACGACTTGGAGGCTCGTGGATTCGTACGGCCCTTTTGCATGGCCTACATTTCCGCAGACGAAAGGAAGATCATGCAGCAGTTCCAAGAACTGTCATCCGAGTTTTCCAAGGCATCAGAAATTCTCAAATCAGGAAACAGGAAAGCTTTTGCAAATGAACTGGAAAAGAAACTGAAAGACTTGGAGTACACCAGATCGGTGCTGCACAAAGAGGCAGAGCAGCAGAAAATGAACAATGGCTGTTATTCCACACAAGCTATTGAGAAGGCGAATGAACTAGCAAATATGGAGAAGTCTATCTATGAACACAAAGATCTACTGAGGCAAATCACATCTTACCCTTCCAGAAAAAAGAGAGATCTGTATTTTGGACAATGCGAGACAGAGCAACAAGCTGACACAAGTGTATCAGATGATACACGAAATAGTAATAATTCTGAACCTGCAGATAAGACACTGGAATCTGAAAGCGATAGCAGAAAGTCCTCCTACACGCCTCAGCTCATCAAGGCCAAATCTGCGAAGTGCTTTGATAAACGCTTGAAAACATTAGAAGAGCTCTGCGATTCCAGCTATTTTCACCAAACTTTAGAGCAACTAAATGTAATCGAGAAGTCATTCCGAGGAGATCTGTGCTCTATTTATACCAGCCAGATTGACAGGGCTCTTCTGAGCAAACAGAGAGTTACTAGTTTTCTCTTTGAATCTGAATGTGACTGGGAGGACGAAGGAACCTCAAAGAACTTCAATATCACTTCCAACAACCCAACGATCCCCATTCTGAACTTATCTGGTGAGCCGCTGAGTCTTGACTCCTACACCACCTGCATAGATGTAGATCACATTAAGGCAGGCGTGGAGTCTGTGGAAGGGCCTCATGAATCCAGTACATCTGACATCACGCAGGAAACCTCAGAGGCCGCCGACACTGAGACCAAAGGGAGTTTAAGTAGCGACAAGAGCATTGAGGCTCTTGGAGGTGTTAGTCCTTCCAGTCTACATTACTTTGATGGCCTTGAAAGAAAGTGCAAGGTATCCGTTGCGTCCTCATTTGAAAATACGTCCCATTCTATTGCTGTCCCACGTAGGTCATCTGATGGGAATCTAGTCCCGATAGATGCAGCTTGCTGTATTGGACAGGATGGTTTTGTTTTTGAGGAACCTTTACCTGAGCTCGCCGAGGAGTGTTGTGGCGACACTGTGGTGAACCAAGAACCTCTGTCTCTTTTTCAAGGAGATCCTGCCTTACAGGTAAACTACATTCTTGAAGAGTCAGCCCTCGCAGAGAGCCCCAACATGGGACTGACTTTTTCCGATCTAAATGCTTGTGTTCTCTCAGAGGATGTGGCAAAAATTAATATCGAAGATGCCTCTGATAGTACAAGCTTCATGAGCGCCTCCACCAGTTCTGACCGAGCGGTGTCTCCGTTCACTTATGGCAGTGCGTTGACGCTAAAGCAGAAGAAGAAAGCTGGTCACAGCGCTCTTCGATTCATCAGGCAATATCCATTTGCTCAGCAAGCCATTTTCTGCCTTCTGAGTGGCCGAACGCTCGTTATTTTGGGGGTGGACGAGGGCACGGTGAGGAAGCTGGTCAATGCTTTGTTTGTTTTTGTGCCCAATCTCGGCAAGTATGGTGAAACCATCCAACCGTGGCTTACGACACCATTTCAGCTTACAGACTTGCAGAGATGGAAACTTATTGGATTGCAGAGAGCTGCCTCCCCGACTGGATCCAGCATCCTCCACTCTTTGAATCGATACAGCCGTTACATAGGCATTTTGGATTGCGACAACAAGACCCTCCGGTGTCCACCGTACAGAGGAACACTAATAAGCCATTTGGCGGACCACAGGACTCAGATCAAACGTGGCAGCACCTACTTCCTCCATGTTCAGGGTATGTTGACTCAGCTTACAGCCAAGGCCTTCCTTTACACATTCTGCCATCACATTCACCTTCCCATGGACATCAACGACCAGGGCTCGGTAACGTCACGCAGGACTAATTTCTTGTTGCAGCTCGGCTACACTGTGGAGGAGAGTAAAATTGTCCAGTACCTGAGTGAGCTCATCAAGCAGCATTACATTCAGGGCTCCTCCAAGTGGGTCAACCAGTCTTTTTGTTTTAATTACACCACCAGCTATTTGTACAAAATCTGAATGTGTCCAGTCCACTATCTGTTCATCATTAACCAACCCCGGTTAAAATCAGGAGACCAAACGTATTGAATGTAATCACTTATTTTTTGTGAATATCCTCATGGCATTCCAGGAAGCAGCTGGTGGAACGTCTGGTGTTACAGAATGTGGTGTGTTTGTTTAGTGTAAAGGTTTCCTATTTAAATCTATTGCCAAACCGTTTCCGTAAAATGGAGAAAATAGGTTCCTTATGTGGTCTTAAGACCTTACAGAAGCTATGTAATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03967726_03970443.mRNA True 3122 mRNA 0.46 2 3967457 3970713

Neighbor

gene id symbol gene type direction distance location
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 14414 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 17913 3946230 ~ 3949544 (-)
CI01000046_03920813_03930435 SLC29A4 coding downstream 36823 3920235 ~ 3930634 (-)
CI01000046_03825822_03873637 TNRC18 coding downstream 92498 3825165 ~ 3874959 (-)
CI01000046_03777712_03789322 NA coding downstream 178117 3777591 ~ 3789340 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding upstream 41195 4011908 ~ 4017841 (-)
CI01000046_04021483_04023514 GFER coding upstream 49745 4020458 ~ 4023514 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 155174 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 165142 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 309152 4279865 ~ 4297801 (-)
G198438 NA non-coding downstream 51528 3915693 ~ 3915929 (-)
G198435 NA non-coding downstream 55055 3912198 ~ 3912402 (-)
G198413 NA non-coding downstream 63068 3904048 ~ 3904389 (-)
G198412 NA non-coding downstream 64295 3902938 ~ 3903162 (-)
G198410 NA non-coding downstream 67667 3899567 ~ 3899790 (-)
G198417 NA non-coding upstream 11945 3982658 ~ 3997407 (-)
G198423 NA non-coding upstream 19391 3990104 ~ 3991124 (-)
G198429 NA non-coding upstream 21720 3992433 ~ 3994698 (-)
G198426 NA non-coding upstream 40027 4010740 ~ 4011325 (-)
G198459 NA non-coding upstream 56941 4027654 ~ 4027938 (-)
G198265 NA other downstream 167356 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1099663 2866070 ~ 2867794 (-)
G196463 NA other downstream 1798813 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3187164 774434 ~ 780293 (-)
G195098 NA other downstream 3291329 670736 ~ 676128 (-)
G199054 NA other upstream 2126646 6097359 ~ 6097674 (-)
G199014 NA other upstream 2393465 6364178 ~ 6375406 (-)
G199130 NA other upstream 2607267 6577980 ~ 6594210 (-)
G199181 NA other upstream 2855972 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025613 smcr8a coding NC_007114.7 CM002887.2 40255408 ~ 40258950 (+)