XLOC_009375 (mmp13b)


Basic Information

Item Value
gene id XLOC_009375
gene name mmp13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 33825750 ~ 33834577 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018424
TCATACGGCCAACATGGAGCTTAAAACTGTTCTACTATTGGTGATCGCTGCATATAGTTCAGCAAAACCCATTTCAACTGAGGAGAAAGACAAAGCTGTGTTAGCTAAAAAATACCTTCAAAGGTTTTATGGCATGCCGGCTGGTCTTCAGCGACCGGGAAAGTCGTCTGATCTCATGCAGCAGAAGATCAGAGAGATGCAGGAGTTTTTTAAGCTGGAGGTGACTGGAAAGCTGGATGACAAGACTGTGGAGCTAATGGAAATGGCTCGCTGTGGAGTTCCAGATGTGGCTGAATATAATCACTTTCCTCGAGATCTCAAATGGAAAACCACAAACGTGACCTTCAGGATTCTGAACTACACTCCTGATCTGAAGAAGAAGGTTGTGGACAGAGCCGTAAGAAAAGCACTGAACGTCTGGAGCAAAGTGACCCCGCTGAGATTCACGAAAACGTTTGATGGAACTGCCGACATCATGATCAGCTTTGGAACAAAAGAACATGGAGACTTCAACCCGTTTGATGGACCTGAAGGTCTTCTTGCTCATGCGTATCCTCCTGGAATCGGCATTGGTGGTGATACACACTTTGACGAGGATGAAACATGGACTGAAGACTATCATGCGTTCAATCTGTTCCTGGTTGCGGCTCACGAGTTTGGTCATGCTCTCGGTATGGCTCATTCGTCAGACCCTGGATCTCTTATGTACCCGGTTTACTCCTACGCCAAAGGTTTCCCTCTCTCCGAGGACGACATTGAGGGCATCCAGTCTCTCTATGGTGAAAACCCAGACCATGAAAAATTCAAGCCTAAACCGATTGCTCCAGAGAAATGTGACCCTGAACTGAGTTTCGATGCCATCACTGAACTGCGTGGAGAGactattatttttaaagacaGGTTTTACTGGAGGCTGCATCCAAATATGCCTGAACCAGAACAAACCCTCATTAAAAACACCTGGCCTGAAATACCAAACAAAGTAGACGCTGCCTATGAGAACCCAGAGAGAGATGTGGTCATCATATTCAGCGGTATCAAAATGTGGGCTCTCAATGGCTACACTCTTGTTGACGGCTACCCAAAATACATCCACAAACTTGGCCTCCCGAAAACGGTCCGCAAAATAGATGCTGCTGTCAACATCCGAGATACGGGCAAGACTCTTCTGTTTGTAGATGAAGAATACTGGAGTTTTGATGAGCAGACAGGCACTATGGACACTGGATACCCACGATCCATTGAGGACGACTTTCCTGGAATAGGAGATGAAGTGGACGCCGCTGCTTATCATTACGGATACTTGAACTTGTATCATGAACATACTCAGTTTGAGTACAGTTACAGCGCAAGGAAAGTCGTTCGCATCATGAGGGCAAACTCCATACTCAATTGCTGAGCACTTACAACTTTTTTTCAATTCTGTGTAAATTAACATTCATTTTTaggttgcactttattttacagtacttgTACTTAATGTGTAAGTAGAAGGAACTGGGTTATAAAAGGTCCCTACAGGTCAAGGGTTGGTATAGAGATTGACCAAGTATTACCCAATTTATGTAAAAACTAAGTTCatatgaaacattcattcattttccttcggcttagtctctttatttatcaggggttgccacagaggaatgaaccacagACTAttgcggcatatgttttacacagcggatgcctttccagctgcaacccagtactgggagacaaccatacactcacattcacacactacatacaatttaaccaacccaattcacctctaccgcatgtctttagactgtgagggaaactggagcacccggagtaaacccacacgaacatgatgtaaacatgcaaactccacacagaaatgccaactgatccaactgggactccaaccagcgaccttcttgctgtgaggcaacagtgcttatcactgagccaccatgccgccctcaTATGAAACAGTAGTGTAAAATAAAGTGCGACCCATTTTTATGTGCTTTCAACTACTGAGCTGGCAAATCAGTAGAACGTCTCTgtgattttattgtttatatatttatagactATGATTCTGGAATCATAGTAGCACTAGATTCTGCATATGCATCCAATGGGAGGCGAAGAAAGTGATTGAAAAACTGTTATGAGAAAAGCCAAA

Function

symbol description
mmp13b Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix and extracellular region. Human ortholog(s) of this gene implicated in anodontia; artery disease (multiple); osteoarthritis; ovarian carcinoma; and spondyloepimetaphyseal dysplasia, Missouri type. Orthologous to human MMP13 (matrix metallopeptidase 13).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0030574 collagen catabolic process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6152 Predicted to enable metalloendopeptidase activity. Predicted to be involved in collagen catabolic process and extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix and extracellular region. Human ortholog(s) of this gene implicated in anodontia; artery disease (multiple); osteoarthritis; ovarian carcinoma; and spondyloepimetaphyseal dysplasia, Missouri type. Orthologous to human MMP13 (matrix metallopeptidase 13).

Ensembl:

ensembl_id ENSDARG00000100794

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018424 True 2158 mRNA 0.44 10 33825750 33834577

Neighbor

gene id symbol gene type direction distance location
XLOC_009374 n4bp2l2 coding downstream 6878 33809864 ~ 33818872 (-)
XLOC_009373 pds5b coding downstream 17992 33744549 ~ 33807758 (-)
XLOC_009372 trmt9b coding downstream 91638 33702918 ~ 33734112 (-)
XLOC_009371 NA coding downstream 144072 33665924 ~ 33681678 (-)
XLOC_009370 CT027778.1 coding downstream 162578 33663055 ~ 33663172 (-)
XLOC_009376 CR855379.2 coding upstream 34084 33868661 ~ 33887667 (-)
XLOC_009377 NA coding upstream 35002 33869579 ~ 33877331 (-)
XLOC_009378 mag coding upstream 57231 33891808 ~ 33933820 (-)
XLOC_009379 lsr coding upstream 103179 33937756 ~ 33965440 (-)
XLOC_009380 si:dkey-30e9.7 coding upstream 159998 33994575 ~ 34056879 (-)
XLOC_009367 NA non-coding downstream 1007755 32813736 ~ 32817995 (-)
XLOC_009366 CR855389.2 non-coding downstream 1189973 32633290 ~ 32635777 (-)
XLOC_009364 NA non-coding downstream 1392077 32413314 ~ 32433673 (-)
XLOC_009383 FP017158.1 non-coding upstream 444844 34279421 ~ 34279535 (-)
XLOC_009389 NA non-coding upstream 767945 34602522 ~ 34607406 (-)
XLOC_009404 CR848683.2 non-coding upstream 1579889 35414466 ~ 35661368 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000095_01821436_01824400 MMP13B, MMP13 coding CI01000095 null 1821210 ~ 1824414 (-)