G195097


Basic Information

Item Value
gene id G195097
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 407423 ~ 426326 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU221615
AGGTTTTCCGGAAGGCCAGAACAGTTGCTCCGTCTATCGTTTTCTTTGATGAGATCGACGCGTTAGCAGTGGCGAGAGGAAGTTCTCCTCACGCGGGCGGTGTCGGTGATCGTGTGTTGGCTCAGCTGCTCACCGAGATGGACGGAATCGAACAACTAAAAGACGTCACGGTTCTCGCCGCAACCAACCGACCTGATATGATTGACAAGGNNNNNNNNNNNNNNNGTCGTCTGGACCGTGTTATATTCGTCCCGCTGCCGGACGCAGACACTCGCAGGGAGATTTTCACGCTGCAGTTTCGGAACATGCCCGTCCATCCCAGCGTGCACCTGGAGGACCTGGTGACCCGGACGGAACGCTACTCAGGGGCAGAGGTGAGAGGTCACTGCAGCTGCAGGGGTCAGAGGTCACGGTATCATTTGGTAAAGTGTTTTCACACTGTTTATAGGAGA
>TU221614
AGGTTTTCCGGAAGGCCAGAACAGTTGCTCCGTCTATCGTTTTCTTTGATGAGATCGACGCGTTAGCAGTGGCGAGAGGAAGTTCTCCTCACGCGGGCGGTGTCGGTGATCGTGTGTTGGCTCAGCTGCTCACCGAGATGGACGGAATCGAACAACTAAAAGACGTCACGGTTCTCGCCGCAACCAACCGACCTGATATGATTGACAAGGNNNNNNNNNNNNNNNGTCGTCTGGACCGTGTTATATTCGTCCCGCTGCCGGACGCAGACACTCGCAGGGAGATTTTCACGCTGCAGTTTCGGAACATGCCCGTCCATCCCAGCGTGCACCTGGAGGACCTGGTGACCCGGACGGAACGCTACTCAGGGGCAGAGGTGAGAGGTCACTGCAGCTGCAGGGGTCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU221615 False 452 TUCP 0.54 3 407423 426326
TU221614 True 405 TUCP 0.55 3 407470 426326

Neighbor

gene id symbol gene type direction distance location
CI01000046_00399845_00400761 NA coding downstream 6611 399189 ~ 400812 (-)
CI01000046_00332581_00354353 ANKRD50 coding downstream 53070 332581 ~ 354353 (-)
CI01000046_00224464_00306703 FAT4 coding downstream 100720 224445 ~ 306703 (-)
CI01000046_00085822_00091135 AURKB coding downstream 316288 85184 ~ 91135 (-)
CI01000046_00063416_00065082 NA coding downstream 342341 63153 ~ 65082 (-)
CI01000046_00428495_00432835 SPATA5 coding upstream 1293 427619 ~ 432835 (-)
CI01000046_00446100_00446285 FGF2 coding upstream 19245 445571 ~ 446285 (-)
CI01000046_00461851_00464237 NA coding upstream 35389 461715 ~ 464237 (-)
CI01000046_00527690_00528880 NA coding upstream 101186 527512 ~ 528880 (-)
CI01000046_00557959_00566058 CHRNA9 coding upstream 129213 555539 ~ 566877 (-)
G195120 NA non-coding downstream 136 406967 ~ 407287 (-)
G195194 NA non-coding downstream 18879 388127 ~ 388544 (-)
G195189 NA non-coding downstream 30262 376921 ~ 377161 (-)
G195176 NA non-coding downstream 83361 323849 ~ 324062 (-)
G195172 NA non-coding downstream 95300 311843 ~ 312123 (-)
G195202 NA non-coding upstream 28611 454937 ~ 455209 (-)
G195107 NA non-coding upstream 32201 458527 ~ 460525 (-)
CI01000046_00567573_00573618 UBE2KB, UBE2K, UBE2KA, UBE2K.S non-coding upstream 140620 566913 ~ 575050 (-)
G195245 NA non-coding upstream 161799 588125 ~ 588385 (-)
G195249 NA non-coding upstream 171959 598285 ~ 599020 (-)
G195098 NA other upstream 244410 670736 ~ 676128 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other upstream 351407 774434 ~ 780293 (-)
G196463 NA other upstream 1741940 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2439933 2866070 ~ 2867794 (-)
G198265 NA other upstream 3331297 3665243 ~ 3800101 (-)

Expression


Co-expression Network