G195098


Basic Information

Item Value
gene id G195098
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 670736 ~ 676128 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU221617
GCTGTCCGTAGGAACCCCAGCCCCGCCCTGGGGGTGGAGTTAAACACCCTGCTGCTTCCAGGGGCTCAGAAGGCTGACAGACATCACACCGTAACTCGAGGAATCACCAAAGGCGTGAAAGAGGACTTTCGTCTGGCGATGGAGCGTCAGGTGTCACGATGCGGAGAAAACCTGCTAACGGTGCTCCATCGTTTCTGCATTAATGAAAAGATCATCCTCATCCAGTCATTACCCTGAGCGACCTGTGACCTTTAACCTTAAATTAAACCTTGTTTCAGATGGTTTTGCTATCGTTTTTGTTACTTTACACTCTTATAATGTAAGAGGGCATGATAACAGACATGTTTTTCTTACATTAAGCTCCAGACATGTTTAAAGTCACATCCAGCAGAACTCATTTAAGGCATTTTTTATTCCAGGTATTAATTTGACAAACAATAAGAAAGATTCAGCATTTCCATATTCTTTGTCTGTAAATGGAGATTGCTCTGTTAAATGTTTTTTTGTATTGTTGTAACATACTTAATGGACTATACTGCGTTTTGTGTAATATAATGTTTTCTGGCAGCTCATAATAAATAAAACAGTGTTTCTCTAGTTGTATACTGAGATTAATTTCATAAATGCTTTGCTCTAACTTGTTTCAGGCCATCCATCACTAGACATACATGGTAGTTTTGTTTTTAGGTACCAATCTTTGGAATTAACAGCTTTCAATCATTGGCTCTCAACCTTTTTGACCCCAAGGCCCCATAAATTTCAGATTTAGGAGTTTTTAAGTGTCCCACTCATTTAACCAATGAATTTGCATGACTTTTCCAGTCGTTTGTGTTTCAATGCATAAGGATTTTAAAAACAAACTTATATATATATATATATATATATATATAATTTTTTTTTTTTTTTTTTTTTACTCAAATTATACCTGATTAAATATTTTAAAGCTTGGCATAATCAGAAAAAAATTATATTCATTATAAAAATGCCCATTTTTAAGTTTTTATTGATTTACTTTTCTAGTACAAGTTTTGACAGAGTAAATGAAATTATTAATGGCATGTTGCATGAAATAAATGTACATTGAAATATAAGCATAAATAAACTTTATGAATAAATAAACCTTTTTGCATGTTACATGATAAAGGACATGAAATACCTGAAATATGCCTTGAAATGAACAACATGATATATGAAGCAGATGACATAAAACTAATCATTATATCATAAAATAATTAAATGCATAGTGAAATGTTGCAGTTAGTAAACATATGTCTAAAAAGACTGAAATATTACATAATACAAAAAATAACAACATGAAATTTGCATTGAAATGAATATTTTCCCTTTCACCTGTCAAAGTCTTGAAGGCGAGGTCTAAAGAACTGCTTTGTTTTTGAGAGTAGAAATCGAGCTAATTGATTACATGTAATACGCGCCTTAATTATGGCTTATATGTCATTGTACATTTAAAGGTTTATTGCAACATTACATGGCTTATTTAAGAATTCCATTATGTATTTATTTATTTATTTATTTATTTATTTTATTTAGTTTGCTAAATCCCTCAATATTCCAGGACTAGAAGTCACACTTTTAAAATTAGGCTACCTCTTGTATCCAGGTTGAGGTGGTGAATTAAAATTAGAAATATCTTGATTTTAGATTAGTTTTATCTTGTTTTGTTGAGGCCCCCTAGTGGACCCTGGAACCCTTGTTGAGATCCACTGCTCTAAATAAATATATGCTAAGACAATCTCTATGAAATAAATTTGTAAAACTCCTCTCATCACTCTTCTTCTCTCTCTGATGGAATGGGAAGGTTGGCCTGCAGAGCTGCTCTGAGATTTGCCCAAAACAGCTTCTGCTTGGCTCCTTCCTGTGGCCACTCTAGATATGTGCGTCTGGACATCATGGCCTTGAGTTGGTAGTACTTGGAGGGAATGAGATATAACGGCAGAGGTTCCAGCAGAATAAGGAGGATGCTATCCATCCCTCGCATTACCCTCTGGTGATTGGCGAAGTAGAGCTCGTAATGGCACCATTCGCTCTGGACGAAATGTGACGACAGCACGAAGACGCACCTTCTGCTGTGCTCGATGCATCGGAGGATGTTCTGAACGATCGTCTTTCCCGGGATAAAGTCCCGCTCGTGGTGACAAACTCGCAACCCACAATCGCCCTCGAGCTTGGGAAGAAATTGAGCTTTGACCCAGTCTGCGTTCTTTTGGCTGTACGATATGAACGCATGAAAGCGCAACCCCTCCATATCCTCAGTCTTCTTCTGGGAGGTTATTGCGTGGTGCTTGGCGCGTGTCCATTTCCACATCATCTTGAGATACCACGGCACGTCCAGCCGATGGCAAAGAAGGCTGATGGCAACTACCAGAGTGATTGTCGGGATCAGAATCGTAACAGCCAGGATCCAGCCATCACAGGATATCTCAGGAAGGTAGAAGTCTTTTAGCATGGTGTTGCTCCTGGATTCTGGGTAACTACATTGATATCCTTCCGGCCAGTGGCCGAGAGTCACACCAGGAGTTTGTGTTGCTTGGTTTTTGATGAGAGCTGCGAATTCTCGCAAAGCACAAGTGCAGATGAAGGGGTTGCGGCTCAAGTCGAGATCTTTGAGATAAGGACAAGTCTCGAGGGTTCCCGGTAAAGGCGAATGGATGGAGTTTGTTCTTACTTGGAGCTTCTGCAGGTTTGGGAATGCTTGACAAGTGGGAAGGTCCAGCAAGCGGTTATCTGCTAGGTCCAGGATGCTCAAGTCTTCTAAGACCCCAACATCTGCAGGGACTGTGGTCACTCGATTATTCCGGAGGTTTAAGATTCTTATGGAATCGGGCAAACACTTGAAGATGCTCTGGTCAAACCCATTTGAGGACAAATCCACGTGGGCAACTTTGCGAGGCCAAACGCACTTGCCTTGTTCCTCGGAATAAGTAAGCTTGTTCTGACTGAAGTCAGCGTATTTCAGTGAGCTCATGAGATGGATTCTGGAGGTCAGCGGTCCAAGATGTTTCAGGTTGTTGCCCCTCAGAACCAGACTTTCCAGGTTTGTTAGTGTACTACATTCTGTATCTGGACCAACCGAGAAGATGTTTTCCGTAAGGGCGCAATCGGACAAGTCCAACACCTCGATCTTGCTAACAGTCTGAGGGCAGGTCATAAAGATGATGGGCGTTTGGGTTAAACTAACTTTTCTCGCTGGCATGCTTATGAAGAAGTCATAGAGCTCTGTTTGGTTGAAGATGAATTCGGTTACAGACGCTCTTCTTGTAGAGAAGGACTCCAACAAGCGGCTCGAGGACACAGGCCTGCCGTCTATCATTTTTGTCATGGTAAGGTCTGAGAAGGAAAGCTGTTGAATGGCAGATGACAGTATTGTGTTTACACAGCCTGTCAGAACTTCCCAGGTGGTTTTTACCTTGGAGATTTCTAGACTAATGGTGCGTACTGTTCCTCGCTGGCATATCTGCTGGAGAACCTTCATCTCGCTGTCCATCTTGGTGAATTCTACCTCTTTAAATGATGCAAAAACATCATCAGCGATTGCAATATCTAGGTCTTTGTTGGACAGGGCGATGACGGCCTTCTCTGCATGGGCACCCATTAGACTCCTCTCTTCATACTTCTGTAGCTTATCAGTATTAATGAAGAGCGTTTTCAAAGTAAGATTGGCAATGTAAGTAAAGTCTTCGTTGCCGATTGAAATGGCACTCAGGCCAAGCCACTGCAGGTGTTTCAGGGTAGAAAATTCCTTCCCTAGTGCCATGACGGAAAACATGTTGGATGACAAGTCTAAGAACTGCAGATTTCCCGCCTTAAGCAGGTATGGTTGGTCAGAGAGGTTCTGGAGTCTGTTGTGCGACAGGTCCAAAATCTCCAAAGCCGGTGTGGAGTTAAATGTGTCCATGTCTATGTTTTCCAGTATATTCCAGGACAGATTGAGGAAATGGAGTCGTGGTGTAGTGCTGAAGTCTTTGCCGCTCAGCGTCTGGATGTGGTTCAGCGACAGATCCAAGTCCTCTGTAGATGGTTTCAGGCCGGGAGGAACCGAGGACAGGTTCTGAGATGAGTAATTCACTATGATCCTTTTAATGGCCAGAACGAGAGATGGGTGTAAACACGTGACATAAACAGACATCAACCACCAGCATGACGGCTTCATCTTTCTGACACGAGTGAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU221617 True 4190 TUCP 0.41 2 670736 676128

Neighbor

gene id symbol gene type direction distance location
CI01000046_00665298_00665879 NA coding downstream 4857 665298 ~ 665879 (-)
CI01000046_00660745_00664133 NA coding downstream 6603 659204 ~ 664133 (-)
CI01000046_00619217_00636285 NA coding downstream 34290 618969 ~ 636446 (-)
CI01000046_00589815_00591549 NA coding downstream 79187 589648 ~ 591549 (-)
CI01000046_00567573_00573618 UBE2KB, UBE2K, UBE2KA, UBE2K.S coding downstream 95686 566913 ~ 575050 (-)
CI01000046_00690567_00697727 NA coding upstream 14012 690140 ~ 699872 (-)
CI01000046_00702360_00703954 NA coding upstream 25811 701939 ~ 703954 (-)
CI01000046_00749734_00763064 NA coding upstream 73556 749684 ~ 763481 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S coding upstream 101544 774434 ~ 780293 (-)
CI01000046_00790248_00814884 MKL2B coding upstream 114055 790183 ~ 814884 (-)
G195124 NA non-coding downstream 168 670069 ~ 670568 (-)
G195250 NA non-coding downstream 70786 599140 ~ 599950 (-)
G195249 NA non-coding downstream 71716 598285 ~ 599020 (-)
G195245 NA non-coding downstream 82351 588125 ~ 588385 (-)
G195104 NA non-coding upstream 2132 678260 ~ 682667 (-)
G195127 NA non-coding upstream 7567 683695 ~ 684595 (-)
G195268 NA non-coding upstream 28305 704433 ~ 722196 (-)
G195101 NA non-coding upstream 58942 735070 ~ 736556 (-)
G195115 NA non-coding upstream 88769 764897 ~ 770106 (-)
G195097 NA other downstream 244410 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 604825 63153 ~ 65082 (-)
G196463 NA other upstream 1492138 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2190131 2866070 ~ 2867794 (-)
G198265 NA other upstream 3081495 3665243 ~ 3800101 (-)
G199054 NA other upstream 5421231 6097359 ~ 6097674 (-)

Expression


Co-expression Network