G195115


Basic Information

Item Value
gene id G195115
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 764897 ~ 770106 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU221635
CACCAAATTGATGTTAATAATAATAATAATAATAATAATAATGAACATATGTTGCTGTACTTAAGTGAAACATAAAAGGAAAAAATCTAGTTCCATGAAATTGTAGTGGACTGTTAAAAGGTTGTAAGGATTCATTTCAAATGTCTTAATATATTTACCAGAAACTGGAGGTTGTCCATTTTTTTCCTCAAGAAGTGGGGCATTGGGGCCCCCTGGGTAAGGAGGAGGGGGGTCACTGGACATGTTGGATCCCTAGAAAGAAGACCAGAAAAAAGAGCTTCTGAGGTGAACACAGACAGGCCGCATGGTTCAGTAAGCACACATTTTAATGTGATCGGGCCATCCCTGACTACTGTTGCTGAGGCATTTCACATCCAATTATCATCGATTTGCAGATGCTCACTGCCTCAACACTCCCCTGAGCCCACAAATAAAAACAACATATCCATAAGCATGAATTATCTAACCTTATGAACACAGATTTGCTTTGCACTTTGGACTAATAAAGGTCAGTAGGTCAAGCCATGTGCCTCAGTGATATGGACCTGTATCCTAATTCTACAGGTTACAAGATACAACATTGTTCTGCAAGTCTAGCTCCGTTTACATGGACACTAATAATCCGTTTGTTGTTGGACTAGTAGCACAGTCGGAATAAAAAAAAGCAACATGTAACCACGTCAGTCAGAATGAATTAGTTAAATCCGATTTAAATTTCATTCTGTTTCAGAGGGGTGGTTTAAACCTTTTCTAATCTGTTCGATGGGACATGTCGATTAGATTAAAAGCTGAAACAGGAAAGTTTTGTGCATGTGCAATGACGTGCAAATGGCGTAAGACGCAAAGAACGAGATGTTGTTGTTGAAGTGTCATGACTGTCATCATGTCATTCTAAATTCTCCTTCCACTCATCTTCTGTGAAGTGGTGCAGGTCAACGTCCCACCAGTGCTTGCTTCGGACTCTCATCCACAGATGCCATTTTTTTTTACTGCTTGATAAATATAAGCAGCATGGCACAAAGCTTCATGTGCTCATCGTCTCCTAATAAGGGCCCGAAATAGATAAATATTAAGTTTGCTTTTTAAAACAAAGAAATGGTAGGAGGATGATTAGTATGCGCAAACAGCTGGAAACTCTGTATATTCGTGCAGTGCGTGCATTTCAAAAGACTAAATCCGATTTGAAGCTTGAGACAAACGCGTACATCAACCTGATCACTTTATTTAGAGTTCATGTAAACACAATATGTCTGGATTCATCAATCAGAATGATTTGAAACAAAAATTATGAGCAGCAAATCATCATATTAGAATTAGGGATGCACCGATATGAACATTTTAGCCAATACCGATAAACGATAATTCTTTATATTTGAAAGCCGATAACCGATATATTGGCCGATATGATATATTGATATCTAAATCAATTTTTTTTTTATAATTTTTGAGAGCCTGATTACAAAAACAAGTCTCACCATTAAAAGCCATGTCCCAAACACACAATTACAATGTTGTCATTGTAATATTATGTAGCCTATATGACAGACTTGTGCTGTACGTTGCACTGTATTTTCCTTTTTGAAGTGATTTCAATCATATTTCAAGCAAACCATAATGGCAGACAGTGCGCATCTGGAGTGTCTCAGCTGAAGGAAATAATCCATTATTTATCAGCTTTAATATATCGGCCAAATTTTCTTATCGGGCTGAAAACAATAACATTAAAAATGAACATATATCGGCCGATACCAATATGGTGGCCGGTATATCGTGCATCCCTAATTAGAGTGATTTCTCAAGGACCATGTGACACTGAAGACTGGAGTATTGATGCTGGAAATTCAATAAATTACATTTAAACAATATTAAAATAGAAAACTGTTCCTTTAAATTATAATCATATTCCACAATATTTCTGTTTTTATTGTATTTTTGATCAAATAAATGCAGTCTTAGCGAGCAGAGAGAGCAAGAGACTTTAAGCCTATTCTTGTTCCAAACACCATAATCAATAAGAAATCTAGACTTAAAACAAAAACAGAAAAATAAAATAAGTAACTACAGTACAGCACAATGTTATGCAATAAGTGCAGTCTCTTGGTTTAAGTAGACAGTTTTGGCGTTTAAGAAGTTAAAGTAACAATATTTACAGTAGACAGTGGCACAGTATTTACATATGCTGGTCAAGACTAACATTGTGTGAAATGTGTCCTTTCATTAAAAAAATGAAAACTGTCGAAGGGAAATAAATGCAAATGAGAGACAAGATCATGGGAGAAACCGCACCTCATTTGAAAACCAAATCTAAGTATTGACATTATAACTAAGACCATGTCCTCAGTTTTGATCTTTTAAGTTATAGTGGCATAACTGCACATTTATGACATTATTATGGTCCTCGTCAAATATTTATAATTAGATAGTCAACATGCCCCTTTTAAAGTGGCTCATCATAGATGTGCCCCCTTGACTCAGCTGGTAAACAGGTGATTTGACTACAGATTATCTTATTTGCATTTTCTTGGAATGATTACCACCAGCCAATAGGGATGAAGCAGGAAATGCACAAATAAAGACATGTGACTATACTATATGTGGAGCGTATAAATATTGTGTGAGCCTGTCTATTGGTATATGTAGTCAGAGTAACTCGTTGCCCAGTTCACATCCTGTATTACTTAGGATAATGGAAATGAATTACACAGAATACTTCTCCATATAACCACAAATTTTGTCAACATATCTGATGTACTGCCACCATGTCATTAGGCCATTTAAACTTCAACTTCAAAAAAGATCTGATACAAAACAGTAGATATGCAGCAGAACATCCTGTTAATTAAAAACATTAACATGGCATATCTGAATATTTAATTCACACTGAACACAGCTTATACAGTATCATTCACAGCATTGCATAACGCTACCTATCCACCTTTTTCCTAACAAGCCTACTTCGTTTTAGATTATGAAAGGCACTTCAGGTTTGGGGAAGTTCCACTTACAGAGGTGGAAACAAATAATTTCAAATCATAAGGTTGTGCTAGAAATAATACTTATCCATCAGTTTGTCTCAATGAGCTGTAACATTTCCTTCATGTTTTATTTTCAGACGTCAGGAGAATAACATTGCGCTTGGTATTTTAATGTGACGTGGTATAACAAGAATATCTATGACAAGAGCTCTTTTTAGTTGCTGCATTCTTTTCCTCTGGATTATTTTCTTTTTTATTTCGCTGTAACGTATGAAAAAAAAAAAACATATGCTGTACTTTTGTGGTCTGCTCTCCCAATTCAAAATACACACCGATCAGGCATAACATTATGAACACTTTCCTAGATCCTAATATTGTGTTGGTCCTCCTTTTGCTGCCGAAACAGCCCTGACCCGTCGAAGCATGGACTCCACTAGACCCCTGAATGTGTGCTGTGGTATCTGGTACCAAGATGTTAGCAGCAGATCCTTTAAGTCCTGTAAGTTGCGAGGTGGGGCCTCCATGATTTGGACTTGTTTGTTCAGCACATCCCACAGATGCTCGATTGGATTGAGATCTGGGGAATTTGGAGGCCAAGTCAACACCTCAAACTCGTTGTTGTGCTCCTCAAACCGTTCCTGAACCATTTTTGCTTTGTGGCAGGGTGCATTATCCTGCTGAAAGAGACCACAGCCACCAGGGAATACCGTTTCCATGAAAGGATGTACATGGTCTGCAATGCTTAGGTAGGTGGTACGTGTCAAAGTAACATACACATGGATGGCAGGACCCAAGGTTTCCCAGCAGAACATTTCCCAAAGCATCACACTCCCTCTGCTGGCTTGCCTTCTTCCCATAGTGCATCCTGGTGCCATGTGTTCCCCAGGTAAGTGACTCACATGCACCCGGCCATCCACGTGATGTAAAAGAAAATGTGATTCATTAGACCAGGCCACCTTCTTCCATTGCTCCGTGGTCCAGTTCTGATGCTCACGTTCCCACTGTTGGTGCTTTCGGCAGTGGACAGGGGTCAGCATGGGCACCCTGACTGGTCTGCAGCTATGCAGCCCCATACGCAACAAACTGTGATGCACTGTGTATTCTGACACCTTTCTATCAGAACCAGCATTACCTTCTTGAGCAATTTGAGCTACAGTAGCTTGTCTGTTGGATCGACCACACAGGCCAGCCTTCGCTCCCCACGTGCATCAATAAGCCTTGGTCGCCCATGACCCTGTCGCCGGTTCACCACTGTTCCTTCCTTGGACCACTTTTGATAGATACTGACCACTGCAGACCGGGAACACCCCACTAGAGCTGCAGTTTTGGAGATGCTCTGACCCAATCATCTAGCCATCACAATTCGGCCTTTGTCAAACTCGCTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCTAACACATCAACTTTGAGGACAAAATGTTCACTTGCTGCCTAATATATCCCATATGCTGTGATGAAGAGATAATCAGTGTTATTCACTTCACCTGTCAGTGGTCATAATGTTATGATCGGTGTATGATATATGCCATGAATATTTCACTGGAATGCATAAGAATCTCTCATTTTCTCCCCAAAGCCTCACGCCTCTTTCCGAGTTTATTTTCACCCGGATGCTTTAAAATGTAATTGTCTCCCAGTGTTTACTGGAATGTTTCTAAAACAGGTAAATACAATATTTATTGTCTGTCAAAATGATGTAAATTGCTTTGAAATATTATCACTCAATGTTCCAGTTAATGGATGTTTTTTTAATAAGGCAATTGCAAAATACAGACATATATTACTACACTGACATTTAACATGTCCGTAATATTGCTGAGGAAATAGTCAAGCTTTTAGGGAATTTAGGGTCTGTTGTTGTATTAATTTGTTAATGCTATTACACTTTTAAATTTCCTTTTAATGTTCAATAGTTGAAGAGCAAGAAGAATAATGTCATCTTATTGTACAGAGTTTTTGAAAATGCTTATCGCATTCATAGAGCGAACCTTTCGCCGACTGTTTAGTTACTCCCATAATTCACGCAAAGCATCATGGTGCGTAGGAAAAAGGTGGGTAGGCTGATCTTGTACAGCAGATAAACAGTAACCAAAAAAAATGTTCTAAGAACGTTTTGTTAAAGGATTAGTTCACTTTCAAATGAAAAT

Function

NR:

description
glutamate--cysteine ligase catalytic subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221635 True 5147 lncRNA 0.38 2 764897 770106

Neighbor

gene id symbol gene type direction distance location
CI01000046_00749734_00763064 NA coding downstream 1416 749684 ~ 763481 (-)
CI01000046_00702360_00703954 NA coding downstream 60943 701939 ~ 703954 (-)
CI01000046_00690567_00697727 NA coding downstream 65025 690140 ~ 699872 (-)
CI01000046_00665298_00665879 NA coding downstream 99018 665298 ~ 665879 (-)
CI01000046_00660745_00664133 NA coding downstream 100764 659204 ~ 664133 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S coding upstream 7566 774434 ~ 780293 (-)
CI01000046_00790248_00814884 MKL2B coding upstream 20077 790183 ~ 814884 (-)
CI01000046_01047300_01066367 UNKL, UNKL.S coding upstream 277103 1047209 ~ 1066367 (-)
CI01000046_01074910_01076076 GPER1 coding upstream 304692 1074798 ~ 1076424 (-)
CI01000046_01098117_01099160 GPR146 coding upstream 327152 1097258 ~ 1099160 (-)
G195101 NA non-coding downstream 28341 735070 ~ 736556 (-)
G195268 NA non-coding downstream 42701 704433 ~ 722196 (-)
G195127 NA non-coding downstream 80302 683695 ~ 684595 (-)
G195104 NA non-coding downstream 82230 678260 ~ 682667 (-)
G195124 NA non-coding downstream 94329 670069 ~ 670568 (-)
G195280 NA non-coding upstream 69258 839364 ~ 839703 (-)
G195282 NA non-coding upstream 70321 840427 ~ 840692 (-)
G195307 NA non-coding upstream 103002 873108 ~ 933608 (-)
G195333 NA non-coding upstream 133270 903376 ~ 903776 (-)
G195098 NA other downstream 88769 670736 ~ 676128 (-)
G195097 NA other downstream 338571 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 698986 63153 ~ 65082 (-)
G196463 NA other upstream 1398160 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 2096153 2866070 ~ 2867794 (-)
G198265 NA other upstream 2987517 3665243 ~ 3800101 (-)
G199054 NA other upstream 5327253 6097359 ~ 6097674 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G182877 NA unknown NC_047605.1 CM018551.1 16913258 ~ 16922922 (+)