G198190


Basic Information

Item Value
gene id G198190
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3397969 ~ 3398865 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU224949
CCGAGATTGATTTCCCACCCTAAAGCCTTGGCTTTCTCTTATTTTCACAAATCCAAAATGATGAAAGTCAGCTAGGCTTAGAAACACAGTTAGATTTCCTTGAAAGGCTTTTTCAGGTACCCATGGGATACCTGAGCAGACACCCAGATTCTCTGTGTCCACTATGAATTCAATATCTGCTCACATAACAGGGCAGCGCTGTTCAAGTCAGAAGGCAAAGCATCTTCACTCTAAAAATGAAATCCATAGGAAGAAGAAAAAGTATATATAAATCAGAAAATATAAACCTACCACAGCATTCTGTGTTGGTCTTCAGACTATATGAGCTCACCTGCAGTTCACTGCCTACATTAACAGCTGCCTTCAACAGCAGCATCATGAACCCTCATAAGTGACTGATGTGAAATGGTCTACGTAGGCAGAAACTAATGCAGAGTGATGGGCATCACACAGACAGAGCTCAGCATGTGTAGAAGAGTTTGATGTTAGTATGTTGCTAAGAGATGTTTGCATCTGAAGTCTTCAAGTACTCATTTCTTTTTTTTTCTTTTTTTTTAAAGTACAAATGTTTTGTTTTAAGGATTTTTACTGGAAAACAACACAAAAGTACTGAATAAAAAAGGCTGCAGTGTTCTTGTGATGATGCCTCAAAATTTGGTCAAAATAAGGGCAACATAATGTTGCTGTCTAGTGCCTACTGTGTAATGTATTTTTATGAATTCAGAGCATGAGTTTGCCAAGTTCTATGAAAGCAAGCCTGGAAAGCCACCTGTAGAAATGTATCTTGATGGTGAGACTCAATTTCATTTAACCACACTGAAACATCCACACAATGGACACTGCAGAAGTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU224949 True 852 lncRNA 0.39 2 3397969 3398865

Neighbor

gene id symbol gene type direction distance location
CI01000046_03140684_03161621 CARD11 coding downstream 236348 3140382 ~ 3161621 (-)
CI01000046_03095399_03129278 GNA12, GNA12A coding downstream 268317 3094953 ~ 3129652 (-)
CI01000046_03080433_03083966 EIF3B, EIF3BA coding downstream 313677 3080433 ~ 3084292 (-)
CI01000046_03067420_03068783 CHST12A, CHST12 coding downstream 329186 3067367 ~ 3068783 (-)
CI01000046_02972183_02978771 LFNG coding downstream 419198 2972183 ~ 2978771 (-)
CI01000046_03606941_03615212 MMD2, MMD2A coding upstream 207852 3606717 ~ 3615212 (-)
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding upstream 236115 3634980 ~ 3641081 (-)
CI01000046_03643306_03647935 ARPC1A coding upstream 243317 3642182 ~ 3647935 (-)
CI01000046_03761959_03768003 FSCN1, FSCN1A coding upstream 361586 3760451 ~ 3768116 (-)
CI01000046_03777712_03789322 NA coding upstream 378726 3777591 ~ 3789340 (-)
G198044 NA non-coding downstream 186675 3182085 ~ 3211294 (-)
G198020 NA non-coding downstream 340023 3057730 ~ 3057946 (-)
G198014 NA non-coding downstream 348129 3049620 ~ 3049840 (-)
G198013 NA non-coding downstream 348450 3049101 ~ 3049519 (-)
G198012 NA non-coding downstream 349544 3048179 ~ 3048425 (-)
G198264 NA non-coding upstream 144435 3543300 ~ 3543526 (-)
G198281 NA non-coding upstream 152634 3551499 ~ 3552690 (-)
G198307 NA non-coding upstream 153895 3552760 ~ 3554252 (-)
G198318 NA non-coding upstream 161366 3560231 ~ 3560540 (-)
G198289 NA non-coding upstream 167079 3565944 ~ 3566155 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 530175 2866070 ~ 2867794 (-)
G196463 NA other downstream 1229325 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2617676 774434 ~ 780293 (-)
G195098 NA other downstream 2721841 670736 ~ 676128 (-)
G195097 NA other downstream 2971643 407423 ~ 426326 (-)
G198265 NA other upstream 358758 3665243 ~ 3800101 (-)
G199054 NA other upstream 2698494 6097359 ~ 6097674 (-)
G199014 NA other upstream 2965313 6364178 ~ 6375406 (-)
G199130 NA other upstream 3179115 6577980 ~ 6594210 (-)
G199181 NA other upstream 3427820 6826685 ~ 6830453 (-)

Expression


Co-expression Network