G198408


Basic Information

Item Value
gene id G198408
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3898277 ~ 3898515 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225201
CTTAATTGACTGTGACACCCACTAAAACTCCACCATAGATAAGCAGCTGAGATAAAGCATGTTTTCCCCCTGAAAATCAGCCTCTTTCTTCAGAATTGCATGCGTCTATTTACAGTTACGTTGTTCCCATGACTTTTTAATAGCAAGTTTTCAACCATCGTCGTCCTCAGAACACAGTGCCAGCTTTGTGCTATTTAAAGATGGTGGGAGCAACAAAATGCATGAACATTCTGATTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225201 True 239 lncRNA 0.40 1 3898277 3898515

Neighbor

gene id symbol gene type direction distance location
CI01000046_03825822_03873637 TNRC18 coding downstream 23318 3825165 ~ 3874959 (-)
CI01000046_03777712_03789322 NA coding downstream 108937 3777591 ~ 3789340 (-)
CI01000046_03761959_03768003 FSCN1, FSCN1A coding downstream 130161 3760451 ~ 3768116 (-)
CI01000046_03643306_03647935 ARPC1A coding downstream 250342 3642182 ~ 3647935 (-)
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding downstream 257196 3634980 ~ 3641081 (-)
CI01000046_03920813_03930435 SLC29A4 coding upstream 21720 3920235 ~ 3930634 (-)
CI01000046_03946243_03948935 CPSF4 coding upstream 47715 3946230 ~ 3949544 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding upstream 52666 3951181 ~ 3953043 (-)
CI01000046_03967726_03970443 NA coding upstream 68942 3967457 ~ 3970713 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding upstream 113393 4011908 ~ 4017841 (-)
G198407 NA non-coding downstream 63 3897988 ~ 3898214 (-)
G198406 NA non-coding downstream 820 3895536 ~ 3897457 (-)
G198405 NA non-coding downstream 4343 3893605 ~ 3893934 (-)
G198404 NA non-coding downstream 5415 3892448 ~ 3892862 (-)
G198286 NA non-coding downstream 6466 3891020 ~ 3891811 (-)
G198409 NA non-coding upstream 92 3898607 ~ 3898900 (-)
G198410 NA non-coding upstream 1052 3899567 ~ 3899790 (-)
G198412 NA non-coding upstream 4423 3902938 ~ 3903162 (-)
G198413 NA non-coding upstream 5533 3904048 ~ 3904389 (-)
G198435 NA non-coding upstream 13683 3912198 ~ 3912402 (-)
G198265 NA other downstream 98176 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1030483 2866070 ~ 2867794 (-)
G196463 NA other downstream 1729633 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3117984 774434 ~ 780293 (-)
G195098 NA other downstream 3222149 670736 ~ 676128 (-)
G199054 NA other upstream 2198844 6097359 ~ 6097674 (-)
G199014 NA other upstream 2465663 6364178 ~ 6375406 (-)
G199130 NA other upstream 2679465 6577980 ~ 6594210 (-)
G199181 NA other upstream 2928170 6826685 ~ 6830453 (-)

Expression


Co-expression Network