G198429


Basic Information

Item Value
gene id G198429
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3992433 ~ 3994698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU225228
AGAGACTGTAGTGCTCGTAAATGTAATGAAAATATTATTAGACTTTTTTTTCTTCTGCATTTTTCCCTTGTTCTTGGGAGTTTGTTGTCATATAGGGACAGGTTATATATCAAGGTGACCTCAACTCTGTTTTTTTGTTCTTTTTTTCTCTCCGTGGTCATATTTTAATATTCATGTGTCTGTATAATTATAGTCAGTTACATTATAAAGTAGATTGGTCTAATTTGATACCAAAAAGACTGAATTGCCCCTAACTGACTGTTAGTTGTTCATACTAGTTCTTAAGGCACAGTATTAACATAATTGCTATGTTCATGCAACTGGCCCCTGGTGTACAATAAAACTGCCGCTCAATCTGTCACTGACCTGACAAGCCTTCAAGCTCAGTTTAATCTCCACCTGGCTTGTCTGTGTGCCAACCCACATGTAAACCTGTGAAATAAGCAAACAAACAACTCAGCAACAAAAATCACTGCCAGCATAATCTGTTCAGCTGAATGCATGAATCTCTACCTCTTTCCCATTGTCCAAAAGCATGATGTCATCATCAGCCAGGTCATCTTGACAGAAGTCTGAGCACTTCTCTGATACAGCAAAGTAACCCTTTTCATTTGAGCACCTAAACAGTCTAGCGTATTTCATGTAGTCTGCATCTTCATCGTATGGCTTCTGTGAGCCAATGCCAACCCAGAAGAAATTTTCTGGCTCTTCCCCTTCATTTATCACCTGTTTGCTATAAGTGTCATCAAACATGGTGTTCATAATGTCCTCAGCCAGTTTAGCTTCATCAGGGTCTGCTGCTCGACCCACCCACGTGTACACTATTCCCTGGTTGTCTGTACTTTCAAATGGCACCTTCAATATGAAGCAGAATTCAGAGTTGAGGTTACCGGAATCTGTGGCTATTTGAATAGTCCTAAAAACACAACAGAAACACCACACATGTACATTTAAAAAAAAAAAAAAAATTAAGATACAGCTGATGCAAAAACACTACCTGTACATAACATTATAGTTACCTGGTGCATAGCGCACTTCCATTTGTCCTAATGTGGTATAAGCTTGGCTGCACACTGTCCACTTTCAGCTTCCTCTTGCCTTTGTGGATGATGAACTTTCTTTTGAAGTGTGACAAGAACTTGAGATTCTCCTGTTGCTGGGTCATCCTCACAACCTGAAACATACATATGACGTCTCCTTAAAATAAAAGTCCATTCATGTCATGACTTATGTGAAAATTATCGCTGCTGTATTTGTCATTTTTATTTTTCAAAAATCATTACTATTGGTCAATGAAAAGTATTAAAAAGAGCTTGTGACTAAACCTCATAACTCAATTGAATCTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225228 True 1350 lncRNA 0.38 4 3992433 3994698

Neighbor

gene id symbol gene type direction distance location
CI01000046_03967726_03970443 NA coding downstream 21720 3967457 ~ 3970713 (-)
CI01000046_03951775_03952660 BUD31, BUD31.L, BRAFLDRAFT_113775 coding downstream 39390 3951181 ~ 3953043 (-)
CI01000046_03946243_03948935 CPSF4 coding downstream 42889 3946230 ~ 3949544 (-)
CI01000046_03920813_03930435 SLC29A4 coding downstream 61799 3920235 ~ 3930634 (-)
CI01000046_03825822_03873637 TNRC18 coding downstream 117474 3825165 ~ 3874959 (-)
CI01000046_04013708_04017841 SYNGR3, SYNGR3A coding upstream 17210 4011908 ~ 4017841 (-)
CI01000046_04021483_04023514 GFER coding upstream 25760 4020458 ~ 4023514 (-)
CI01000046_04125918_04128585 CCDC97 coding upstream 131189 4125887 ~ 4128585 (-)
CI01000046_04136250_04185791 CACNA1H, CACNA1HA coding upstream 141157 4135855 ~ 4185848 (-)
CI01000046_04279865_04297801 EPN2 coding upstream 285167 4279865 ~ 4297801 (-)
G198423 NA non-coding downstream 1309 3990104 ~ 3991124 (-)
G198438 NA non-coding downstream 76504 3915693 ~ 3915929 (-)
G198435 NA non-coding downstream 80031 3912198 ~ 3912402 (-)
G198413 NA non-coding downstream 88044 3904048 ~ 3904389 (-)
G198412 NA non-coding downstream 89271 3902938 ~ 3903162 (-)
G198426 NA non-coding upstream 16042 4010740 ~ 4011325 (-)
G198459 NA non-coding upstream 32956 4027654 ~ 4027938 (-)
G198457 NA non-coding upstream 36083 4030781 ~ 4031323 (-)
G198460 NA non-coding upstream 37097 4031795 ~ 4049740 (-)
G198469 NA non-coding upstream 55202 4049900 ~ 4057116 (-)
G198265 NA other downstream 192332 3665243 ~ 3800101 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other downstream 1124639 2866070 ~ 2867794 (-)
G196463 NA other downstream 1823789 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 3212140 774434 ~ 780293 (-)
G195098 NA other downstream 3316305 670736 ~ 676128 (-)
G199054 NA other upstream 2102661 6097359 ~ 6097674 (-)
G199014 NA other upstream 2369480 6364178 ~ 6375406 (-)
G199130 NA other upstream 2583282 6577980 ~ 6594210 (-)
G199181 NA other upstream 2831987 6826685 ~ 6830453 (-)

Expression


Co-expression Network