Fish Transcriptome and Expression Database

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model fish

XLOC_009509 (BX890602.1)

Basic Information

Item	Value
gene id	XLOC_009509
gene name	BX890602.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	43073923 ~ 43119191 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018669
TTCCAGCGCAGCTCCTGATCCGCACAGCCAGACAATCTGTGCAGAGGAGAAAGCCACAGCGTCATACACACTTCATCCTGATGTTCCCAGCAGAGCTCAACAGCCACagGCGCAGATGTTGTCCACCAGTGGGCAGTTCTTCAGGGCCGCCTCCACTTTTCCCAGAGACACGTATTCTCCTGCCTGCAGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000098028

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00018669	True	190	lncRNA	0.57	2	43073923	43119191

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_009508	si:ch211-181d7.3	coding	downstream	313813	42741272 ~ 42760110 (-)
XLOC_009506	si:ch211-181d7.1	coding	downstream	337490	42723126 ~ 42736433 (-)
XLOC_009507	CR457441.1	coding	downstream	345337	42728470 ~ 42728586 (-)
XLOC_009505	si:ch211-181d7.1	coding	downstream	353539	42693455 ~ 42720384 (-)
XLOC_009504	NA	coding	downstream	515926	42551423 ~ 42557997 (-)
XLOC_009510	ap1s3a	coding	upstream	35553	43154744 ~ 43164591 (-)
XLOC_009511	NA	coding	upstream	53951	43173142 ~ 43187543 (-)
XLOC_009512	wdfy1	coding	upstream	89402	43208593 ~ 43238220 (-)
XLOC_009513	serpine2	coding	upstream	122724	43241915 ~ 43284021 (-)
XLOC_009514	prss16	coding	upstream	167594	43286785 ~ 43327911 (-)
XLOC_009503	FP340266.1	non-coding	downstream	545019	42528790 ~ 42528904 (-)
XLOC_009501	NA	non-coding	downstream	848163	42219583 ~ 42225760 (-)
XLOC_009499	NA	non-coding	downstream	924343	42148976 ~ 42149580 (-)
XLOC_009515	NA	non-coding	upstream	391359	43510550 ~ 43512072 (-)
XLOC_009517	NA	non-coding	upstream	524653	43643844 ~ 43650523 (-)
XLOC_009518	CABZ01044962.1	non-coding	upstream	532455	43651646 ~ 43651761 (-)
XLOC_009523	NA	non-coding	upstream	880339	43999530 ~ 44020074 (-)

Expression

Co-expression Network