G204966


Basic Information

Item Value
gene id G204966
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 1247643 ~ 1254994 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU232665
CTAAAAAACACTCTACATATTCTTAACTAGTGCTAGTTATGTTTATTTGTATATCAAAACACATCCATGTCTGACATTTGTTGGTTACACTAGAGCTTTGAGTCGCTTTGATACCTCATTATAGCTCATATGGACTTTAAGGGCAGATCTGCTGTGACTTTAGCTGGAAACCGCAGGCCTTACACGAGACCCAGCATACGAGCCGCCCACCAGCGGCACGGCATGATGACCCTGCAGACCTGCCGACAGCCGTGGTAGTTGTAGGGCCACGGCCAGTAGCCCCCGTGTGGCTCGCATACTCGCTCGCAATGGGTGTAACTGCGATGACATTCGGTACAGCAGATCCCACGATGGTCCAACATGGGATCGAATACCATGTGTCCCTCCAAACCCTCCTGATTCTGATGATAAGGGTTCTCAGGGTTATACTCGGGTCCTGTCGGCCGTTCCTCCTCTCTGACTGAACTTGTTGAGTTTCGACGTCTCGCCTGTTGTCGGTTTAATCCACCTGTACTCTGCCGTCTCACCCGCGTCACACTTCTCCTCTTCCTCAGTGCTCTGGCGTTTGCAGGATGATGCCAGTAAATGGGAAGATCTCCACAGAATCTCAGTATCTCAGGGCTCAGAAAACTGTTGTCCTTCAGTGGTTCTTCAGATGCAATCCAAACCAGAGACGCCACTTCAGATTTTACTGCCACAGTTTCTTCTTCCTCAGAAAGTTCAGTTCTGACTTGTGATTTGATGTAACACTTCTCTTTTCCAGGAAACTTGACAGCTGTGATGCCAGCTTTAAAGTCTTGAACTTCCACAATTTTCCCTTCTCCAGCATCGGAATCATCCTCTATCATCTTTATATCGATGTTCCTACTGTAGTGAGCACTGATCGCTTCTTTTTCAGTGACTTTCCACAGGTAAAAAGCTCCAATGCCTCCAAACAGCAGCAGTACGGCTCCGGCGATGAAGGCGACGACCGCCGTCCTCCTGAGACGCATAAACCCTCTGGGCTTCAAGCTCACGCTACCGTAAGCCTCAACAGGAGCTTTTTCTGATGTTTCCTCCATGGTGTTCTTGCATCTACTGAAAGCAAAGCTTTGTGACTTTGTGCAGCTTCTCTCAAGTTTCTGTCATGTAGGTGAGAGAGAAGAAAAAATTCAGGGAAAATAAACAAGATCCCGGAGAAACTCAAGACTGGAATTCCTCTCCAGGGATTTTCTGTGGCCTGAGAAAACATACGGCTGAGACAGACGATTCTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU232665 True 1255 lncRNA 0.48 7 1247643 1254994

Neighbor

gene id symbol gene type direction distance location
CI01000048_01224995_01226178 NA coding upstream 21465 1224857 ~ 1226178 (+)
CI01000048_01214358_01215546 NA coding upstream 31869 1214358 ~ 1215807 (+)
CI01000048_01136676_01137044 NHLH2 coding upstream 110271 1135812 ~ 1137372 (+)
CI01000048_01067628_01068912 NA coding upstream 177300 1067366 ~ 1070343 (+)
CI01000048_01003499_01009234 NA coding upstream 237131 1002748 ~ 1010512 (+)
CI01000048_01299946_01304448 PCDH8 coding downstream 44562 1299556 ~ 1304886 (+)
CI01000048_01322005_01325973 SLITRK5B coding downstream 67011 1322005 ~ 1326130 (+)
CI01000048_01357896_01360700 NA coding downstream 102118 1357112 ~ 1360744 (+)
CI01000048_01374716_01392617 NA coding downstream 119722 1374716 ~ 1392617 (+)
CI01000048_01482623_01492925 NA coding downstream 224745 1479739 ~ 1493233 (+)
G204917 NA non-coding upstream 130059 1115565 ~ 1117584 (+)
G204888 NA non-coding upstream 169944 1077400 ~ 1077699 (+)
G204855 NA non-coding upstream 222126 1025136 ~ 1025517 (+)
G204843 NA non-coding upstream 233672 1013763 ~ 1013971 (+)
G204827 NA non-coding upstream 252217 995224 ~ 995426 (+)
G204965 NA non-coding downstream 13517 1268511 ~ 1268931 (+)
G204970 NA non-coding downstream 19774 1274768 ~ 1347755 (+)
G205000 NA non-coding downstream 102003 1356997 ~ 1362395 (+)
G205260 NA non-coding downstream 247403 1502397 ~ 1502714 (+)
G204824 NA other upstream 253674 993455 ~ 993969 (+)
CI01000048_00659494_00667971 NA other upstream 585787 659022 ~ 670072 (+)
G204472 NA other upstream 885982 361025 ~ 361661 (+)
G204409 NA other upstream 961896 285270 ~ 285747 (+)
G205026 NA other downstream 127961 1382955 ~ 1383698 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location