XLOC_009525 (numa1)


Basic Information

Item Value
gene id XLOC_009525
gene name numa1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 44021044 ~ 44052927 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018687
GTGTGAGTTTGAATTTGAAAAAGTTTCAGCGAGCGGTCGATGTCACCTTAAAATTACGaGACCGCCATGAAGTTTAATAAGAACAAGGCGGGACCACTTTTGACATGGATGAACAGCGTGTTTCCAGAGAATCAAATCTGGGAGTTTGGTCATATGAGAGACGGCTTTCGACTCTTGGAGATCTGCTTCAAACTAAAGGGGAGGGAGGACGTTGAAGCTTATAAGACTTTATCCTTATACAACAAACTGGAAATCATCTTTAATGATTTACATGATGACTTTCACCTGACTGATAGACAACGTTTCCTCATTTTGGGTAAAATCAGTGAAGGACTTGACCTGGAGCTTCAGCTTGCCAAGGTGGCTCTTCTCCTTTGCTATTGCAGTTTTAAAAAGACTAACCCTGTAGCCCTGAATTCAAGAACAGAGTCGGACATCACTTTCATGTTTCGTTTTGTAAGAGATGATGCCAGTGGTTTGTGTTTAGACGAAGGCCTCGATCAATTTCTAGACCAAGACTCTGTTATGAATCTTGCAAACTCCAGTAGCGGGAGCAGCTGCAGTTCTCCATTCTACATCGATGAGGAGTCTCCGATGTTTGGTCGTTTCCAGCGTCCTCCCAGAGTTCAGTTTCAAGAGCTTTGCACAGTGGCTTCCAGCTCAGACAGCTCTCCGATGCAGGATTTGATGAGCACGCCACACTTCCAGTTGAAGAAACTCCGCAAAGAACTGGCGCATGAAGGAGACGTGAGAGATGAGCTGGAGAAAGAGCTGGCCGATCACATCAGCATCATCTCAGAGAAAGAGGGTCTGATCTCCCAGTTACAGCACCGTGTGGAGCGGATGCTGCGGGAACAAGGAGAGCTGGAGAAAGACCATAAAGCTGCACTGCTGGAGCTCCAGGAGAAGAACGAGAGTCTTCTCCACAGAGTTCATGAGGTTTTAAAGCAGTGccaagatttaaaaacagacaactctcaaaaagagaaaaagattGATGAGCTGACAGAAGAGAACGGGACTCTCAGTGCTCAGCTTCGTAATGTTTTCTCTCAGCTGGCGAGAGCAGAGCAGGAAGTTGCCAAACTCACAGTGGTTCATGAATCTGCACAGACGGAGTGGAAAAACAGGAAAGAGTTGCTGGAGAAGGAGCTGAATGAGGCCGTCACACACAAGGAGTGTCTGAGTGAGCAGGTGCTGATACTGCAGGGGAAGATTTCTGTTCTGGAGGATGAACTGAAGAAAGCTCAGTCTCAGGAGAGAGGAGAGGTGCTGGGGCCCATCATGGAGTGGGAAAAGCTCAAACAAGAGTTGGCTGATCTCACTCTTCAACTCGCTCAGCTTCAGGAATCCATTTCCCACCTCGAGAAGAAAAAGGCAGAAGTTGAGGCCTTGTTGGCTGAGGAGAGATGCTCTTTTGAAAAAGAAACCGCAAGACTCCAGTTGGTGGTTTTTGATCTGGAGAAATCCATCAACAGCATCCGTCTGGAGAGAGAAACACTTCAGGAGGCCTTAAAGACGCAGAAAGAGATGCTCTCTGCGCAGATATCAGCACTGGAGAGGGACGTTTCCCGTCTGCAACAGGTTGAAGTGCAGCTGACAGCAGAGATCAAAATATCTGCAGATCTCCGCCAACAGAGAGAGGAGCTGGAAGGAAAGGTAGCATCTTTAGATAGGATGGTTCATTCTCTGCATGCTGAGATCCAGGGGCTGGAAGTGGAGAGAGCTTCTCAACAGGATGCAATTAATTCCCTCATTAGCGATTTACAAATCGCTAGGGCTACTGTTCAGGAATATGAGAAGAAGCTGGAAGAGCATCAAAAAGTGGTAGCAGAAAACAATTCCCTGAAAAATGAAGCATGCACAATGCAGCAGGAGCTGAATAATCATCTAAAGGCAATCGGAGACCTTCAGGCGGAAGTAAATGAACTCAGATTTGAGAAAACTGAGGAAGAGAACAAGGTTAGTGAGGCTTTGGTTAAAATCGAAAGCCTCCAGACTGAGATTCTGCATCTGTGTGAAAAGATTTCTCTTAAAGATGAAGAAATCAGAAACCTGACGAAAGAGTATGAGTCTGTAGACAACGAGCTGAAGCTTGTGAAGGAGcaaaatgttgaaataaatgCAATGATCAAATCTAATCGCAAGGAGCATGAGGAAACTGTTGAAAAACTTCAGCAGGAGCTTCATTGCGCTGCTTCTGCCGCATCAGAAAAACAAGAGCAAATGCTGGTTTTATCAGCAGAGGTAACATCTCTGAAAGAGCAAATCTGCAGATATAGTGAAAATGAGGCACAGAAACAACAGGAATTGTCTATTTTAGAAGCACAACACAATGTGCTGAAGGAAAACCTGACTTCTCTACAGAACCAGTTGGCTGAGGCGACAACTTCAGCTTCACAGAAGGAATCAGAGTTTATTTTGCTTCAACAGGAGCTTTCCCATCAAGAAACACTAAGAGAACAAACTCAGGAGCTTGAGAAGATTAAACGTGAGGAGCTTGAGGGGATCGTGAGTGAACTTCAGGCCAAAATTATTGAGGTTTCCTCTATTGCCTCAGAAAGGGAAGCTTGTGTGAGCTCCCTTCAATATGAGATGAAAGATCAGCTATCGAAAGCCAAACAGTGTGAAGCTGATCTACGCAATGAGATGAAGGAAAAGGTTGGAAATTTGCAGGAACTTCTAGACGCTGCTAACCATGGAATTGCTGAAAAAGAGCATCACTTAGAGTCGTTGAATCAAAGTCTGAAGCAGATGGAGCTTCTGTACTGTCAAAAGGAGGAAGAAATCATTGCAAGTCAACAAGCAAAGCAGCAACTGGAGAATAATATTGCTGAGCAGAAACAACAACTAGATGAGATTCAGCAAAATCGAGAAATACTAAGGAATGAAAGAGACCATCTGTCTACTCGAGTATCATCTCTCCAAGAGGAAATTCATCGTTCCCAACAGGATTTTTCTGATTTACAGACTGACCACAATGTTTTGAAGGAAAAACTGGTTAATCTTCAGGATCAAGTAGAGCAGGCGATGATTACTGCTTCCCAGAAGGAATCTGAACTCCTCTTGCTTCAACAGGAGCTTTCCCATCAAGAGACCCTGAGAGAAAAAGCTTTGGAGCTTGAGGCCATCAAGCGAGAAGAGTTTGAGAAAAAAGTGAAGGAACTGCAGGACAGAATTCTAGAGGTGTCAACTCTTGCCTCTCAAAGGGAAGCCCAGGTAATTTCTcttgaaaatgagatgagggATCAACAGTTGAGTGCCAACCAATCTAAAGATAATCTCTGCAGGGAGTGGCAGGAGAAGCTTGGCATCTTGAAAGGAGAATTAGATGTAGTCAGTCGAGACGCTGCAGACAAAGACCATCAACTGGAATCTTTGGATCAAAAGCTTAAAGAGATGGAAATGGTTGTCCTTCAAAAAGAGAAAGATGTAATGGAGACACATCAGGCAAAGGAGGACCTGGAGAAGAGAATTGCTGAGCTTGAGGAGTGCAAGCAGAAATTAGAGATTATGAGGAATGAAAGAGATCATCTTTCAACTGAAGTAGCATCTCTAAAAGAGGAGATTCATAGCTACCAGGATACTCAAATGCAGAAACAACAAACAATTTCTGTTTTGGAAGTTGAAAACAATGCTTTAAAGGAAAACATGGCTGCCCTTGAGAAACAATTAGCAGAGGAGATAACTACAGCTTCACAGAAAAATTCAGAGCTTCAAAACAAGCTTCATCAACAAGAGAGCCTTCACGAAAAGGCTCAAGAGCTTGAGATTGGCAGGCATGAGGAATTTGAGAGAAGAGTGAGAGAACTTCAAGCTAAAGTCCAAGAGGTGTCCACTCTTGCTTCTGAGAAGGAGGCTGTTGCTTATTCTCTTCAGGAGGAATTGACGGGTCATTTGAAGGCTAAAGTGTCCGAAGATGATCTCCGTAGAGTCCTGGAGGAAAAAGTGGAAACCTTACAGAGAGAAATAGAAACTGCTAGTTGTGATGCCACAAGCAAAGACGGTCTTTTGCAGACTTTGGATCAGAAGCTGAGGCAGATGGAGATGCTTTGCCAACAAAAGGAGGATGCAGTTTTTGAGATCCAGAACTCAAAAGAAGACTTGCAGAAAGAGATGAATGAACTTGTTTCTAAGAATCAAGAACTGGAGGGCTGCCTGCAACATTTGGAAATggtaaaaaaggaaaaagaccTCCTGTCAAATGAAGTAACTTCTCTGAAAGAGCAAATAAATGATCAGAGTTTGAGGGCCAAACAGTCTGAAGCTGATCTTTGCATAGTCTTTGAGGAAAAGATTGAAACCCTTCAAGGACAACTGGAATCTAGTAGTTGTGACGTCTCGGACAAAGAGAAACATCTGCAAACTTTGCATCAAAAGGTTTCACAGATGGATCTGTTGTGCCAGCAAAAGGAGAATGCAGTTCTTGAGATGCAGAACGCAAAGGAAGACTTGCAGAAGAAGATTGATGAGCTTGTTTCTGAGAAACAACAACTGGAGGGCTGCCTGCAAAATTTGGAAATGGTGAAAAGCGAAAGAGACCTCTTGTCAACTGAAGTAACTTCTCTAAAAGATCAACTAAATGATCAGGATTTGAAAGCCAAACAGTCCGAAGATGATCTCCGCAAAGTGTTGGAAGAAAAGATTAAAAACCTCCAGGGACAACTTGAAACTGCTAGTCGTGATGTCTCCGAAAAAGACCAGCTTCTGCAGACTTTGGATCAAAAGGTTACACAGATGGATCAGTTGTGTAAGCAAAAGGAGAAATATGCTCTGGATTTGCTTCAGGTAAAGGAGAATTTGGAGAAGAGGATTGGTGAGATTACTGTTGAGAAACAGCAATTGGAAGGATGCCAGCAGAATTTGGAAACAGTGAGCAAGGACAAAGACAACCTTTTAAATGAATTAACCTTTCTTAAAGTTGAAATCCAAAGTTACCAGGAAAAAGAAGTGCAGATGAAACATGAGCTTTCTGTTTTAGAGAATGAACACAACATTTTACAGGAGAACCTGGATACTCTTCAGAAGCAAGTGGTGGAGTTGACCGCTTCAGCTTCTCAGAAAGAGTCTGAGCTTCAAAATGAGGTTTGCAAACAAGAGAAACTTCAAGAAAAGGCTCAGAAACTTGAGAAGGATGCAGGTGATCTTCAGGCTAAAATTCTAGAGATTTCCACTCTTGCTTCTGAGAGAGAGGCACAAATAAGTTCTCTTAAAGATGAAATAAACAGTCAGCATTTGAAAGCTAAACAGTCTGAAGATGATCTCCTCAGAGTGTTTGAGGAGAAAATTGAAAACCTTCAAGGACAGCTTGAAATTGCTCGTCTTGATGTCTCGGACAAAGACCAGCTTCTGCAAACTTTAAATCAGAAACTGAAACAAATGGAAGAACTATGCAAGCAAAAGGAGACATGTGTCCTTGAGATGCATCAGACAAAGGAGGATCTGGAGAAGAAAACTGTTGAGCTTCAAGCTGACAAAAGTCAACAGAATCAGCAGAATTTGGAGATGTTGAGGCAAGAAAAGGACCATCTGAAATCTCTAAACCAGACTATCCGAAGAGAGTGTGAAGCGTCCCGGAAGATTCGAGCTGAGCTGGAGTTGAACGTTGAGGAACAAACTGCTTCCATCCTTGCACTTAAAAAGGCTTCCCAACAGTGGGAGGAGCAGAATCAGGAGCTCCTGGAGCAGCTGAAGGCAAAGACAGAAGCTGTAGAGCACTACAAAGCACAGGTGGAGAAGGCCATGAATCACTACAATGGTAAAAAGCAGCTGCTGCTGGAGGCTCAAGAGCTGAACAAAACTCTTGAGCAGTCATTGGAGGTCAGCAAGAGAGAAGCTAAAGCTCTGGAAACTGAACTAACCCTGGCTCGCATGGAGCTCAACCAAGCCAATGATAAAGAGAAGAGCCTTGCTGCTAAAGTGAAGACTTTGGAGGCCCAAGTTGATTTTGCTGACAGGCAACTGCGAGAGAAGAGAAGGATTGCAGACGATGGTGAGGATTTGAGACAAAAAGAAAATCTGTACTTCAGAGTCCCAGAGAAGCAGCAAGACACCAGTGCAGACAGCCTGGAGTTTGAGCTAAACGATTCTCTCAACACTACCTGtcGTTCTGCAGTACCGGGTGAGTCCAGCACTCCACTGGTCCGTAGTTCTGAGCGTTTGGCTGCTAAACGCCGCGCATTGGGGGCTGAATCTCTCGAGACACTATATTTCACACCTATGGGTAAACAAGGCTACAAACGCAAAGTGGATCACAATGATGGTTTTGAACGCAAACTGGAGTCCAGCATCACTTCTATTGGTGATCTCGTGGTTGATTCTGCAAAGAAATTGACTGCTTCAGCTCGCCGGCGACGCACTACACAAGTTATCAACATCACCTTGGCTAAGAAGGCACAAGGAAGCTCTGAAAGCGAGGAGTCGTTTTCTAGCCTGCACTCAGCCCGTTCTCATCCAAATTTGGCAGTCCACCAATCACGGCCGATCTCCATTGACTTCTCAGAGGATGGTCCTGCCACAACGTTATCAAAAGCAGACACACTTCAAAATCTGCCTGGATATCGCAGAAGTACAGTGCACAGCGTTGGCCCACCAAGAGCCACCAGTACTTTTTGTATTGGAGCAGAGAATGAACCGGAGCATGCTGCCGATGACTGGATGCGCATCGCTGAACTGCAGTCCCGAAACAAAGCCTGTCTGCCTCATCTGAAGAGCAGCTATCCTCTGGAGTCCAGGCCCAGTCTAGGACCATCATTCACTGTAACGGATGAGGACCTGCGCTTGGGCGACCCGAGTGAGACGATCCGGCGTGCGTCCATGATGCCGGGTCAGATCCTGGAGTCGCTGAACTCTCGCCGTTTCTCCCTCGCTCCTGAAACGAGTTCGAGCCAGGCTCCTGCACGCTCTCATCCCCAgcgagccaccatgctgccttgtCAGATCCAATCCAGCACTGCTGCTCACCGGGCCTCACAGCTCACAAAAACAAGCTCACGTTCACACACTTCAGAGAATAAACGCAGCCCGCTGGCTCCCAAACGCCCGGCATCACAACTGCAAGGACCAGACACTCCTGAGGCAAAGAAGTTGGCAAGTTGTTTCCCACGGCCAATGACGCCCAAAGGCCGGTTTGGAAACAGCCAAAACAGACCTCCAGTCTCTCCGGCTGAGCGAAGACAGTCTGTGATGTTTACTGTGGTAAATACTCCAAAGAACAGTGCTCGTGGAGACAGCAGGCTTCAGCGCGGCCTCAACAAGCTGCGTAACAGCACCCGCAAATCTCCTGCCGTGGCCAGTCGGGCTTTGCGCTCGGCCGTGAGCGGGAAATCTCCCCTGGACGTCACTCTGAGGAAATCTCCCCGAAACAAGTCCCCGAAAACATCCAATGCCAAAAAGATCAAGTTAAGGATCAAGGTTTAAACTTGAAGATTCGATCCAAAAACAACCACTTCCTTTTCCTTTTTATGTTCTTCTCTCTTTTCAGATAAGTTAATTCTTATTATGGGAAGCAGTAGTGTTAATTACTGTCCTGTcatgtattatatttaaatgttttacttgTTCTCTCATAATAAAGTCTTTTACATCAAATCTTTGACATGTTTGTCAGGCTGTTTTgctaaatgaatgtaaaataatttcaatatttgTGCAAAGTCAATTCGGAAATGATTGTTTTTCAAATTATGCTTTGTGTTTGGAGAATTTTTCTATTAAAGCGATGGAAAATGCATTCAGCTTTAATGTATGTAAATTTTTTAGTGCGTGTATTTATAATttgaagctatatatatataaatattaaga

Function

symbol description
numa1 Predicted to enable microtubule binding activity. Predicted to be involved in establishment of mitotic spindle orientation. Located in cell cortex and spindle. Is expressed in blastodisc and epiblast. Human ortholog(s) of this gene implicated in acute promyelocytic leukemia. Orthologous to human NUMA1 (nuclear mitotic apparatus protein 1).

GO:

id name namespace
GO:0006622 protein targeting to lysosome biological_process
GO:0034499 late endosome to Golgi transport biological_process
GO:0031023 microtubule organizing center organization biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0070861 regulation of protein exit from endoplasmic reticulum biological_process
GO:0071955 recycling endosome to Golgi transport biological_process
GO:0034067 protein localization to Golgi apparatus biological_process
GO:0090161 Golgi ribbon formation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005813 centrosome cellular_component
GO:0005819 spindle cellular_component
GO:0000922 spindle pole cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005938 cell cortex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-110517-1 Predicted to enable microtubule binding activity. Predicted to be involved in establishment of mitotic spindle orientation. Located in cell cortex and spindle. Is expressed in blastodisc and epiblast. Human ortholog(s) of this gene implicated in acute promyelocytic leukemia. Orthologous to human NUMA1 (nuclear mitotic apparatus protein 1).

Ensembl:

ensembl_id ENSDARG00000102483

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018687 True 7806 mRNA 0.44 23 44021044 44052927

Neighbor

gene id symbol gene type direction distance location
XLOC_009523 NA coding downstream 970 43999530 ~ 44020074 (-)
XLOC_009524 NA coding downstream 3481 44017433 ~ 44017563 (-)
XLOC_009522 nlrc3l coding downstream 25991 43982088 ~ 43995053 (-)
XLOC_009521 chordc1a coding downstream 42903 43961814 ~ 43978141 (-)
XLOC_009520 CABZ01073033.2 coding downstream 148039 43824672 ~ 43873005 (-)
XLOC_009526 lamtor1 coding upstream 17379 44070306 ~ 44077937 (-)
XLOC_009527 CU655961.1 coding upstream 53714 44106641 ~ 44117290 (-)
XLOC_009528 NA coding upstream 66306 44119233 ~ 44123107 (-)
XLOC_009529 CU929391.2 coding upstream 185220 44238147 ~ 44275069 (-)
XLOC_009530 NA coding upstream 317640 44370567 ~ 44393774 (-)
XLOC_009518 CABZ01044962.1 non-coding downstream 369283 43651646 ~ 43651761 (-)
XLOC_009517 NA non-coding downstream 370521 43643844 ~ 43650523 (-)
XLOC_009515 NA non-coding downstream 508972 43510550 ~ 43512072 (-)
XLOC_009536 CABZ01037147.1 non-coding upstream 697587 44750514 ~ 44750630 (-)
XLOC_009538 NA non-coding upstream 1138757 45191684 ~ 45192115 (-)
XLOC_009539 NA non-coding upstream 1247600 45300527 ~ 45313039 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000277_00219921_00228923 NA coding CI01000277 null 219921 ~ 228923 (+)