CI01000051_00036318_00057051 (SCARA5)


Basic Information

Item Value
gene id CI01000051_00036318_00057051
gene name SCARA5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 36318 ~ 57051 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_00036318_00057051.mRNA
ATGGAGAATAAGGCAATGTATCTGACCACCACCACTGAAGATAGGGATAACAGCTCATTTTATGACGATGGCTACGATGGGATGAATCTATCGAAACTCAACCTATGTGAAGAAGTAGGTTCATCAAAGTACAGGAGAAAGACAGATAATTGCTGTGGTCAGCTGGATTCCTTCACTGCAATCAAATATGCCATTGTGTCCCTTTATATTCTGGTACTGCTCACCATATTTGGCCTCTGCATAGCAGTATCAAAATCCCATGCATCTTCACAGAGGGAGGAAGCACTGCTGGAGAATGTGACTCGTCTGGGAGAGCACTCTGAGACCTTGCAGAAATCTCTTAGCCAACTGCCCTCCCAAAGCGACCTTCTGGAGAACATCTGGAAGCTCGAGAGCCTCTTCCATAATCATAGCGAACAGCTGCAGCTGCTAGCAGGGCGACTAGCGCAGGGCTTGGAGCGTGACATCAAAGATCTGCAGGCTTTCTCCGAGCACACCACGGACTCTGTGGCTCAACTCTGGGAGCATCTGACCATGATCAGCCATTCCAGCCAAAGGAACAGCAGCAGTCTGGGAGAGGAGTTAGCCTTTGCTGCTGGCTCTATCCGAACACAGGATGCAATTTTAAAAACAGTAGTGGTAAATGTAGAGACTCTACAGGAGCGTCTGGAGGAGGTGGGATGGACAGTACAGACATTAAACCATTCATTTAGTGGAGATGTGAATCTGCACCAGGTGAAAATCTGTGAACTACAGGAGAGGATTGGAAATGTGTCCCATGATGCCACAAGCATGAGGATCACACAAATACACCTTGAGGAACAGATGAGGAATGAGATTGAAATCCTGAACGTCATCACAGCAGATCTCAGGCTAAAGGAATGGGAGCACTCCATGGCACTCAAAAACTTAACTGTTTTGGAAGGACCACCAGGACCAAAGGGTGAGAAGGGTGATGTGGGGCCCCTGGGACCAGCTGGACTTCCTGGTTTGACGGGAATAAGAGGCTTGCCCGGAGAAAAGGGCATTCAGGGTCCTCGGGGACTGGCAGGACGAGGTGGGCAGGATGGACACAATGGAGAAAAAGGAGATATTGGGCCTGAGGGACCCAAAGGTGTGAGAGGAGAAAGAGGACAGAAAGGAGAGAAGGGAGAGCGTGGAGACAAAGGAGGGAAAACAGTTGAAGAAACTCTGGTAAGGCTGGTCAACGGCTCCGGGCCTCATGAGGGTCGAGTGGAAGTGTTCCATGAGCTTCGATGGGGGACAGTGTGCGATGACGTTTGGGACATAAAAGATGGAGACGTTGTGTGCAGGATGCTGGGGTACCGTGGTGCTGAAGCAATCCACAAAACAGGCCGGTTTGGACAAGGCACTGGGTTAATCTGGATGGATGACGTTGCTTGTGTTGGTACTGAAGACTCTATTCACCAGTGTAAGTTCTCAGGATGGGGGAAAACCAACTGTGGTCACGTAGAAGATGCAGGAGTGACCTGTAACATA

Function

symbol description
scara5 Predicted to enable ferritin receptor activity. Predicted to be involved in several processes, including cellular iron ion homeostasis; iron ion transmembrane transport; and protein homotrimerization. Predicted to act upstream of or within ion transport and iron ion homeostasis. Predicted to be integral component of plasma membrane. Predicted to be active in external side of plasma membrane. Orthologous to human SCARA5 (scavenger receptor class A member 5).

NR:

description
class A scavenger receptor

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_00036318_00057051.mRNA True 1500 mRNA 0.50 9 36318 57051

Neighbor

gene id symbol gene type direction distance location
CI01000051_00000977_00002147 NA coding downstream 33779 810 ~ 2539 (-)
CI01000051_00083434_00086769 NA coding upstream 25669 82720 ~ 87359 (-)
CI01000051_00131867_00138611 ZNF513 coding upstream 73521 130386 ~ 138790 (-)
CI01000051_00224709_00227613 NA coding upstream 167456 224507 ~ 227613 (-)
CI01000051_00262483_00263385 BLK coding upstream 205390 262441 ~ 263385 (-)
CI01000051_00278614_00302552 NA coding upstream 221141 278192 ~ 304373 (-)
G217399 NA non-coding downstream 16956 18604 ~ 19362 (-)
G217453 NA non-coding upstream 13292 70343 ~ 71520 (-)
G217426 NA non-coding upstream 16947 73998 ~ 77287 (-)
G217410 NA non-coding upstream 23737 80788 ~ 97708 (-)
G217430 NA non-coding upstream 71563 128614 ~ 128880 (-)
G217411 NA non-coding upstream 72061 129112 ~ 129592 (-)
CI01000051_00394082_00407612 MTMR9 other upstream 338180 392720 ~ 407612 (-)
CI01000051_00560810_00563417 NA other upstream 505145 560768 ~ 563417 (-)
CI01000051_01785489_01787612 IGFBP1A other upstream 1652247 1784416 ~ 1787760 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017813 scara5 coding NC_007131.7 CM002904.2 1354695 ~ 1383916 (-)