CI01000051_02060996_02061735


Basic Information

Item Value
gene id CI01000051_02060996_02061735
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2060534 ~ 2062355 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_02060996_02061735.mRNA
ATGAGGGAGGTGTGGAGACAGCAGAGGAGGCCACTGAACCCGCTGAACCAGATATCAACGAGCTCTGCAGAGACATGTTTGACAAAATGGCAGTTTTCTTACAGGGAGAGCTCACTGCCACCTGTGAGGACTACAAACTCCTCGAGAACATGAACAAACTCACCAGTCTGAAGTACATGGAGATGAAGGACATATCCATCAACATCAGCCGCAATCTGCAAGATCTCAATCAGAAATATGCCGGTTTACAGCCTTATCTGGATCAGATTAACCAGATCGAGGAGCAGGTTACGGCTCTGGAGCAGGCTGCATATAAACTAGACACATATTCAAAGAAACTAGGTGAGTACAAATACTGCGGGGAAAACACTGCAAGTTTTACGTTATATTTTATTTACTTTTATGTAGACATGTTTAATTTTGATTAAAAATTATGAAGGACACCATTAGTCTTGTCTGGACTGTGACTTTATTTTGTATAAATGATTAACCCTAACCCCAACGTAGAGAAAATGAAGAGCCAGATGATCATCATGATGAAAGAGCGCTGCAGTGATGACGTATTTTTAGTGTCACCCTGGTTCCCTTGACAAAAACCCAATAGGATTTCCCATTGGCTTTTAGATTATTGCAGAAAATAAGCTCTGTGGGCAACAAAAGTTAATGATTCTTACATGTTTTGTTTAACATGATAATCTTCACAAATGGACTATATGCACAGTGTTCTTTAGAACTTCTGCAATAATATAAACCAGCTGGAAAACTTCCGGTGAAATGTCACTTGTTGGTATGTCAGTATCTTCACTGTCCTGAGGTAGCTTTAAAAGCATCAATAGTGTAATACTTAGTTTATAATTTATATGTAGTCACTTAAATAGTCAGGCCTAGCGTTCATTTAGTTATTCAAATGCAAGATGACATAAAAAATAAAGATGTACCTCCTCTGCAAAATTCAATTCAACCATCAGTTTTCGTGCTTTCATTTGAAAAAAAGCATCAACACACTGCATATTAAAGATTTATTGTGCACTTTAGTTAGATTCATTGA

Function

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K16750 BLOC1S2; biogenesis of lysosome-related organelles complex 1 subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_02060996_02061735.mRNA False 1048 mRNA 0.38 3 2060996 2062355

Neighbor

gene id symbol gene type direction distance location
CI01000051_01976321_01985259 PCSK9 coding upstream 74837 1976080 ~ 1986159 (+)
CI01000051_01965924_01969562 NA coding upstream 91394 1965703 ~ 1969602 (+)
CI01000051_01945810_01948306 NA coding upstream 112510 1945810 ~ 1948486 (+)
CI01000051_01765268_01780393 NA coding upstream 278582 1765035 ~ 1782414 (+)
CI01000051_01669393_01716229 NA coding upstream 343728 1669326 ~ 1717268 (+)
CI01000051_02280290_02283028 NA coding downstream 217935 2280290 ~ 2283368 (+)
CI01000051_02285060_02291993 NA coding downstream 221784 2284139 ~ 2292273 (+)
CI01000051_02332216_02342649 PRKAA2 coding downstream 269861 2332216 ~ 2345195 (+)
CI01000051_03014282_03014572 NA coding downstream 951322 3013677 ~ 3014761 (+)
CI01000051_03022303_03035625 TMED5 coding downstream 959139 3021494 ~ 3035855 (+)
G218118 NA non-coding upstream 7846 2052554 ~ 2053150 (+)
G218103 NA non-coding upstream 38502 2021995 ~ 2022494 (+)
G217968 NA non-coding upstream 57832 1993373 ~ 2003164 (+)
G217966 NA non-coding upstream 98353 1961104 ~ 1962643 (+)
G218090 NA non-coding upstream 115894 1944870 ~ 1945102 (+)
G218129 NA non-coding downstream 13061 2075416 ~ 2075640 (+)
G218149 NA non-coding downstream 58925 2121280 ~ 2121584 (+)
G218150 NA non-coding downstream 59567 2121922 ~ 2179525 (+)
G218197 NA non-coding downstream 142457 2204812 ~ 2205133 (+)
G218200 NA non-coding downstream 146175 2208530 ~ 2208788 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 1336292 637590 ~ 720669 (+)
G217075 NA other upstream 1676868 324465 ~ 384128 (+)
G218981 NA other downstream 1183088 3245443 ~ 3246873 (+)
CI01000051_04374052_04393328 NA other downstream 2312055 4372658 ~ 4393677 (+)
G219803 NA other downstream 2852619 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 4763444 6825895 ~ 6830637 (+)
G221319 NA other downstream 5279686 7342041 ~ 7342546 (+)

Expression


Co-expression Network