CI01000051_03435613_03439371


Basic Information

Item Value
gene id CI01000051_03435613_03439371
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3435613 ~ 3439851 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_03435613_03439371.mRNA
ATGGGCTCAACCAGCTTTACCAATCCCTATGCAATCGAAGTCATTCGAATGAAGAAAAACGACCTGGTCAGTGGCATTTCAAATACAGAAGATTTGCTGGATCTCCTCATTGCAAATGGAGTTCTTCGACCCGACAGCCGAGCCATGATGTCCAGCATCACTGCGCAAGAGGAAAAGAACTCCATTATGTTAAACGTCTTGATCTCGAGAGGAGAACGTGCCTGCCGCATCTTTTTCTACCCTTGTCTGAAAAGAGCAGAACCTGACCTTTACCAGCACATGAGAACGTATGTGGGTGGGGTTAATGAGGGCATTAAAGATGCACGGAGACAGCTGATTGGATATCTGCTGGAGAAAGACAAACAAGGTCTTGTCAAATACTCAAAATCAAACAGGGAACCTAATCCTGAAAGAATCCAGCCGAAGTCTATATCGAATGAGGCTACGTCTTCAATAGAACAAAGCGAACACATCCCCAAATCTGAAGATGATGCCATCCTCAGAGCCATATCCTCAAGTGATCTCTATCTCCTCCAGGAGCTTATCAAAGGTTTGGATGTCAATAGTGCTCGCTCGTCCACTGATACTCTGCTACACATAGCTGCTGAATATGGTAAGGAGGCCGTCGTGTACTTTCTTCTCAGACAGGGGGCGAAACTGAACCTCAAGGACAAGGAGGGCCGTACTGCCCTGCACAGAGCTTCAGAACGGGGCCATACTGCTGTTGCTCTGGCTCTTGTGAAGGCTGGGGCGGACATTCATGTTACTGACAAAACATCAAAGACACCTTTGCATCTGGCGGCTCAAAATGAACATGAGAGTACGGTCAAAGCTCTAGTGCTCGAAGAGAAGAAAAGCTTCAAGGATCAGACAACAGTTCTGCACATGGCAGCCATTGAGGACGATGCAAAACTGGCTGAGGTTCTTCTGAGAAACGGCGCTTTAGTAGATACCCGAGATGGACAAAGGAAGACGGCTCTCTATCACGCCGTTCGCCACGGAAATGAGAAAACCGCTGCTGTGTTGTTGAAGGCCGGAGCCCAGGTTGACTCGGCGATCATAGATGCTGCTTTTGAGCTGAACAGAAAGTCTCTGTTGTCTCTGTTTTTGCGGTATGTCCAGAAGTCCATGTCTCAGAATGAGATGAACTCTGCTCTTTTTAAAGCAGTGCAGAGGAACTCGGACAGGGTTGTGGCTGCACTCGTTGATCATGGTGCAGATGTTAATAGTTTTAATGAGCTTGGATACACACCTATGCTTCTAGCCGCAGAGATGGGTAATGCTGAGGCCTTCAAAGTTCTGGTCGCAAAAAAGGCAAGACTGGATGACAGACTGCCAAACCAGATCTCTGGTCTTCACCTGGCCGTCCAAAGTGGAAGTATGCAAATAGCACAGATATTGTTGGATAAAGGCATAGACCCCAACATCAGTGGCCCTAAAGATCAGACCCCTCTCCATCTAAGTGCATTACATAACCAGCCGGCATTGACGGCGCTGCTGTTGCGTGTGGGGGCTCAGATTAACTCCATCACCCAGGACGGACTTACTCCCCTGCACCTCGCGAGCCAGAGCGGCCACACTGAAGCGGTCGCCCAGCTGCTGGAGGGCAAGGCTGATGTCTATGTCAAAGACAAACAGGGAAGAACAGCCCTGCATTGGGCAGCGTCACAAGGGGAGGTGGGCGTCATACAGCTACTGCTAGCTGCTGGGGCCGATGCCAACGCCTCTGAAAGAGAAAAGAAGACCCCACTGCACCTGGCTGCCATGGAGGGACACACTAAGGCAGTTTCAGCGCTGCTGGCCGGTAAAGCTAAAGTTGGAGCTAAGGACATGGATGGCTGCTCTCCACTACATTACGCAGCTCGAAACGGGAAGGAAAGAGCAGCTGGTGTTCTTCTCGCATCTGGTAAAATCAAGAATGTGGATGATAAGAACGTGTGGAGAAGGACTCCTCTGCATTTAGCAGCAGAACATGGACGTGAGCTGCTGGTGGGCCTTCTGCTGGAGAACGGTGCCAAGATCAACTCCCTGGATAACAATAAAGACACGCCGCTGCACTGCGCTTGTCGTGATGGGCATGTGGAAACGGTACAGAGACTAATAAACTGGACAAATGGAGAACGAGCAAACCTTCAGGCAACTAATAATGTGAAGAAAACTGCCCTCCAGGTGGCAGAGTCAGAGGACACACCAGCTCACCAAAACATAACTACCCTGCTAAAGAAGAAGATGTTCCTTGTGAAGTAAAAGAAACATACAGACAGGAAAACTGTATCATCTTAAATATGTTTGGCAGAAATGTCTGCTTAGCTCTTTTATGAATCAGTGACTCATAAGTCACCTCAACTAGCCAGCAGCTTTCACTCTTTGCATCATCAGACACATTTTACAAACATTACATTAAAAGTATGACAGAGACTGACATAATGTATACTAATATTATCTAATGCTTAAAGCTGGCATGAAACAGAAGTTGCGATTGTTGTCTTCCTTATTGTTATGTATATCCAAGTGAAATGGCTTCTTGAACAAATATAGGCCAGGATTTGATTTTGTCTATCATGTGATATGATTGGTTGTGGTTTACTGTTGCTGTGATCTCAAGTGATAGGTTGTGTCACTATGTGCATAGATAAATCATTTCTAATAAATACTGCAATATTCATGAAGACAAGAAGTGTCAATTTTGACTTCATGGTGACTTTAATGTTGTATAGTTAGGCTATA

Function

GO:      GO:0072661, GO:0042981, GO:0043034, GO:0008093, GO:0030507

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_03435613_03439371.mRNA True 2727 mRNA 0.47 2 3435613 3439851

Neighbor

gene id symbol gene type direction distance location
CI01000051_03431193_03432454 JUN coding upstream 2825 3430291 ~ 3432788 (+)
CI01000051_03147600_03152676 MYOC coding upstream 282519 3147234 ~ 3153094 (+)
CI01000051_03128080_03133290 NA coding upstream 302292 3128080 ~ 3133321 (+)
CI01000051_03107566_03109607 ITPA coding upstream 325883 3107566 ~ 3109730 (+)
CI01000051_03038457_03041581 PIGC coding upstream 392880 3036852 ~ 3042733 (+)
CI01000051_03443548_03451188 NA coding downstream 3697 3443548 ~ 3451814 (+)
CI01000051_03457204_03459579 NA coding downstream 17108 3456959 ~ 3459924 (+)
CI01000051_03679568_03682342 NA coding downstream 239586 3679437 ~ 3682528 (+)
CI01000051_03687377_03698806 ANGPTL1A, ANGPTL1 coding downstream 247473 3687324 ~ 3698963 (+)
CI01000051_03800655_03819155 ZYG11B, ZYG11 coding downstream 360804 3800655 ~ 3819197 (+)
G219070 NA non-coding upstream 61488 3373888 ~ 3374125 (+)
G219052 NA non-coding upstream 99839 3335530 ~ 3335774 (+)
G219050 NA non-coding upstream 108952 3326054 ~ 3326661 (+)
G219048 NA non-coding upstream 112643 3322672 ~ 3322970 (+)
G219045 NA non-coding upstream 139069 3295998 ~ 3296544 (+)
G219163 NA non-coding downstream 95909 3535760 ~ 3536015 (+)
G219154 NA non-coding downstream 97336 3537187 ~ 3537679 (+)
G219191 NA non-coding downstream 135315 3575166 ~ 3576838 (+)
G219194 NA non-coding downstream 140363 3580214 ~ 3580535 (+)
G219203 NA non-coding downstream 153249 3593100 ~ 3593330 (+)
G218981 NA other upstream 188740 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 1369530 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 2710909 637590 ~ 720669 (+)
G217075 NA other upstream 3051485 324465 ~ 384128 (+)
CI01000051_04374052_04393328 NA other downstream 934559 4372658 ~ 4393677 (+)
G219803 NA other downstream 1475123 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 3385948 6825895 ~ 6830637 (+)
G221319 NA other downstream 3902190 7342041 ~ 7342546 (+)
G221386 NA other downstream 3969672 7401175 ~ 7413007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017214 caiap coding NC_007131.7 CM002904.2 15560141 ~ 15564489 (+)