CI01000051_04094412_04101387 (CALM2, CALM3, CALM1)


Basic Information

Item Value
gene id CI01000051_04094412_04101387
gene name CALM2, CALM3, CALM1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4094354 ~ 4101516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_04094412_04101387.mRNA
TTATAAAAGAGAAGCTTTTTAGACAGCGGGACAGACAGTCTTCTGCGGCTCGTACTGGATGGCAGGGAGTCCCAGAGCAGCTGCGTCTCTTCCTCTGCTGCGGCGCCCCATCCCCCAGGAGGAGGGTGATGGAGGTTGCCTGGGTACTGGGCACATGGGGAATGAAATGAGCTGTACATCTGGCAGCAGAAAGACCCAGTTATCCAACAAACCAGCACTCTTGCATCAATGTGCAGCTGACCAGTTAACAGAGGAGCAGATCGCAGAGTTCAAGGAGGCTTTTTCCTTATTCGACAAGGATGGTGATGGCACCATCACGACCAAAGAGCTGGGCACAGTCATGCGGTCGCTGGGTCAGAACCCCACAGAGGCAGAGCTGCAGGACATGATCAATGAGGTGGACGCTGATGAAGCATGCAGGAAAAAAACATTTAAAATTGAGGAAATCATAAAGATCTTTGCAGACCCATTGAAAAATGTCGATTGGTTACACAAACTCTACAAAAACGTATGTATGAATGAAATCGCTCTCTCAGCAAAGAGTGACACCAGAAAACTCTCCTATCAGCCTCCTGTCACGGACCTCTCAGATAGACAGACAGACGAGATGGTGTGGGAGGATCAGGAGGCCGCAAGACTTCTGAAGCCACGAATCCCCACCTCCCAGTACACTCATCTCTTTGATGGCTCACTGGACGGTAATGGCTACATCAGTGCCGCAGAGTTGCGTCATGTCATGACAAACCTCGGCGAGAAGCTGACAGATGAAGAGGTGGATGAGATGATCAGAGAAGCCGACATAGATGGTGATGGTCAGGTGAACTATGAAGAATTTGTACAGATGATGACCGCAAAGTGAAGCCGCCTCCTTCTGCCGTGCCCTCTTAGAAGAGAAAAAAAATCAGTCAAATGTTTTACTTACCTCTTGAGAAAAAAAAAATGTTTATTTATTCATAATGTTTCTGTTTAAAAATAATTGAATGTTAAA

Function

symbol description
calm1 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.
calm2 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in long QT syndrome 15. Biomarker of major depressive disorder.
calm3 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in familial hypertrophic cardiomyopathy.

GO:      GO:0005088, GO:0048306, GO:0000086, GO:0007190, GO:0006936, GO:0030426, GO:0010801, GO:0010800, GO:0035307, GO:0030017, GO:0034704, GO:0021762, GO:0051412, GO:0022400, GO:0043388, GO:0071902, GO:0044325, GO:0007223, GO:0005876, GO:0005737, GO:0031432, GO:0031982, GO:0008440, GO:0002576, GO:0005980, GO:0005813, GO:0005634, GO:0032516, GO:0000165, GO:0015276, GO:0000922, GO:0005654, GO:0002027, GO:0005509, GO:0043005, GO:0032465, GO:1901841, GO:0007186, GO:1901844, GO:0051343, GO:0005515, GO:0031800, GO:0030234, GO:0030235, GO:0008076, GO:0051592, GO:0060315, GO:0060316, GO:0043274, GO:0019904, GO:0005886, GO:0008179, GO:0055117, GO:0043539, GO:0070062, GO:0050999, GO:0050998, GO:0038095, GO:0031996, GO:0047485, GO:0034220, GO:0005829, GO:0031997, GO:0030801, GO:0001975, GO:0043647, GO:0043547, GO:0005513, GO:0072542, GO:0005576, GO:0010881, GO:0010880, GO:0051000, GO:0031954, GO:0043548, GO:0019901

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_04094412_04101387.mRNA True 988 mRNA 0.47 8 4094354 4101516

Neighbor

gene id symbol gene type direction distance location
CI01000051_04081532_04085798 PSMC1B, PSMC1, PSMC1A, PSMC1.L coding upstream 8432 4081532 ~ 4085922 (+)
CI01000051_04071144_04075444 KCNK13B coding upstream 17229 4070951 ~ 4077125 (+)
CI01000051_04038453_04045552 TMEM30A, TMEM30AA, TMEM30AB coding upstream 47826 4038407 ~ 4046528 (+)
CI01000051_03800655_03819155 ZYG11B, ZYG11 coding upstream 275157 3800655 ~ 3819197 (+)
CI01000051_03687377_03698806 ANGPTL1A, ANGPTL1 coding upstream 395391 3687324 ~ 3698963 (+)
CI01000051_04155754_04157992 NFKBIAA coding downstream 54168 4155684 ~ 4158329 (+)
CI01000051_04374052_04393328 NA coding downstream 271142 4372658 ~ 4393677 (+)
CI01000051_04419475_04464134 NA coding downstream 317754 4419270 ~ 4464166 (+)
CI01000051_04763063_04778692 NA coding downstream 660980 4762496 ~ 4779082 (+)
CI01000051_04796878_04799272 FLRT2 coding downstream 695362 4796878 ~ 4799321 (+)
G219452 NA non-coding upstream 29501 4064401 ~ 4064853 (+)
G219451 NA non-coding upstream 30901 4063254 ~ 4063453 (+)
G219440 NA non-coding upstream 37913 4056199 ~ 4056441 (+)
G219439 NA non-coding upstream 38388 4055112 ~ 4055966 (+)
G219468 NA non-coding downstream 21032 4122548 ~ 4122937 (+)
G219481 NA non-coding downstream 49947 4151463 ~ 4151765 (+)
G219484 NA non-coding downstream 52926 4154442 ~ 4154766 (+)
G219497 NA non-coding downstream 95011 4196527 ~ 4197145 (+)
G219534 NA non-coding downstream 135180 4236696 ~ 4237117 (+)
G218981 NA other upstream 847481 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 2028271 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 3369650 637590 ~ 720669 (+)
G217075 NA other upstream 3710226 324465 ~ 384128 (+)
G219803 NA other downstream 813458 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 2724283 6825895 ~ 6830637 (+)
G221319 NA other downstream 3240525 7342041 ~ 7342546 (+)
G221386 NA other downstream 3308007 7401175 ~ 7413007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G136566 NA non-coding NC_056718.1 CM032087.1 7371665 ~ 7417179 (+)