CI01000051_04155754_04157992 (NFKBIAA)


Basic Information

Item Value
gene id CI01000051_04155754_04157992
gene name NFKBIAA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4155684 ~ 4158329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_04155754_04157992.mRNA
CTATAAAAGGGCGTTGCGCCACCCTCTCAGCACACTTCATTGCTGACTGCGATACTGCGAGCGTCGCGACATGGATGTACACAGAGCTGCCATAATGAACTATATGGATTGTAATGTTGATGAAATGGATACGAAAAACAGGAAAGTGCAACACTGCGAGGATCGCGTCGATAGCGGCGTGGATTCGCTAAAGGAGGATGAGTATAGGAAAATTGTGGAGGAAATGGAGAGTTTGACTTTGCCAAACCCAAGTGCAAATCCAAAGGGGATGTGTGAACCTTGGACACAAGTCACTGAGGATGGAGACACGTATCTTCACCTTGCCATCATCCACGAGGCGGAAGATTATGCCATCCAGATCATCAAACAGTGTCAGAATGACCCATTCTTGAACAGACAGAACAACCAAAGACAGACTGCACTGCATCTCGCCGTCATCACAGAACAGCCACACATGGTGGACAGGCTGCTAAAGGCCGGCTGTGATCCCCGGCTGGTCGATCAAAGTGGAAACACGGCCCTCCACATCGCCTGCAAAAGAGGGTCGCTAGCTTGCTTCTCAGTACTCACTCAGATTCAGACTCAGCATCTGCGCTCCATTCTCACCTTCCCAAACTACAGCGGACATACGTGTCTCCACATAGCAGCCATTCACAATTACCTCTCAATGGTGGAGAGTCTGGTCCAGCTTGGGGCAGATGTAAACGCAAAGGAGCAATGCAGTGGCCGGACGTCGCTCCATTTGGCCGTAGACCTGCAGAACCTGGAACTGGTGCACTTGCTCATTGCTTTGGGAGCTGATGTCAACAGTCTTACCTACGGTGGATACACACCGTACCACCTGACCTTCGGCCGACAGAACAGCGAGATCCAGAGGCAGCTTTTCAACCGGACGGCCCAAGAGCTGAGGGCGATGCCAGAGAGCGAGTCGGAGGAGAGCGACGAGGAGGTTTCGTCTGATGATGACTGTGACACCAATCCCTCGATGGGACTCCACAACGTGGAAAAGAGCTGCCCCCCTCGGGGACATGATAGCGGTGGTGCTGTTAAACATGGAAAGAACCAGACCAAAAACTTTACCAATATTTCTGAAGCCAAAGACTTGGGAAAATATGTATATTTTGTGAATATATAGAGATATATTTTTATATTTGTAAATAACTCAAATGAAACACTTGTCAATAATGTTTATATTCTATATATTGCACTGTGAAAATATTTTTTACATTAAAAAGAAAGAAATGAATTCTGAGTTGGGGTGTTTCTTGTGTTGAATGTGCTGGAGTGATTTCAGAAGGCTTGGAAATTTTCTTGAGTTGTGAAACTTGTGAAAGAACATGTAAACCCCTGTAGTGGTGGAATTCCAGCACATAGTGGTAGTTAAGAAAAAAAAGCCCTCAATGTGTACTGTAAGTGCTATCATTTCCTTTCTGGAACACATGAGTCACGTAGATGCGTCACTTATAGTTTGA

Function

symbol description
nfkbiaa Acts upstream of or within negative regulation of hematopoietic progenitor cell differentiation and response to virus. Is expressed in several structures, including lateral line system; periderm; pronephric duct; tail bud; and vent. Human ortholog(s) of this gene implicated in several diseases, including childhood-onset asthma; hematologic cancer (multiple); hepatitis B; hepatitis C; and lung disease (multiple). Orthologous to human NFKBIA (NFKB inhibitor alpha).

GO:

id name namespace
GO:1901533 negative regulation of hematopoietic progenitor cell differentiation biological_process

KEGG:

id description
K04734 NFKBIA; NF-kappa-B inhibitor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_04155754_04157992.mRNA True 1472 mRNA 0.47 6 4155684 4158329

Neighbor

gene id symbol gene type direction distance location
CI01000051_04094412_04101387 CALM2, CALM3, CALM1 coding upstream 54168 4094354 ~ 4101516 (+)
CI01000051_04081532_04085798 PSMC1B, PSMC1, PSMC1A, PSMC1.L coding upstream 69762 4081532 ~ 4085922 (+)
CI01000051_04071144_04075444 KCNK13B coding upstream 78559 4070951 ~ 4077125 (+)
CI01000051_04038453_04045552 TMEM30A, TMEM30AA, TMEM30AB coding upstream 109156 4038407 ~ 4046528 (+)
CI01000051_03800655_03819155 ZYG11B, ZYG11 coding upstream 336487 3800655 ~ 3819197 (+)
CI01000051_04374052_04393328 NA coding downstream 214329 4372658 ~ 4393677 (+)
CI01000051_04419475_04464134 NA coding downstream 260941 4419270 ~ 4464166 (+)
CI01000051_04763063_04778692 NA coding downstream 604167 4762496 ~ 4779082 (+)
CI01000051_04796878_04799272 FLRT2 coding downstream 638549 4796878 ~ 4799321 (+)
CI01000051_05072860_05074568 GLRX5 coding downstream 914300 5072629 ~ 5074874 (+)
G219484 NA non-coding upstream 918 4154442 ~ 4154766 (+)
G219481 NA non-coding upstream 3919 4151463 ~ 4151765 (+)
G219468 NA non-coding upstream 32747 4122548 ~ 4122937 (+)
G219452 NA non-coding upstream 90831 4064401 ~ 4064853 (+)
G219497 NA non-coding downstream 38198 4196527 ~ 4197145 (+)
G219534 NA non-coding downstream 78367 4236696 ~ 4237117 (+)
G219539 NA non-coding downstream 86849 4245178 ~ 4245849 (+)
G219543 NA non-coding downstream 89289 4247618 ~ 4247819 (+)
G219547 NA non-coding downstream 91537 4249866 ~ 4250085 (+)
G218981 NA other upstream 908811 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 2089601 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 3430980 637590 ~ 720669 (+)
G217075 NA other upstream 3771556 324465 ~ 384128 (+)
G219803 NA other downstream 756645 4914974 ~ 5052033 (+)
CI01000051_06825895_06830637 NA other downstream 2667470 6825895 ~ 6830637 (+)
G221319 NA other downstream 3183712 7342041 ~ 7342546 (+)
G221386 NA other downstream 3251194 7401175 ~ 7413007 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location