CI01000051_04796878_04799272 (FLRT2)


Basic Information

Item Value
gene id CI01000051_04796878_04799272
gene name FLRT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4796878 ~ 4799321 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_04796878_04799272.mRNA
GTCTCTGGACCCAAATGTCACATCTTCCGGAAACAGCCGGGGCTGGGGCCCATCAGCACTTGACAGCAGGCTGGGAGGTGGACGGTGTGGCTCAGTGCTTCAGCACTCTCTCAGTCACACCCTGCTTGGGCCCTTCATTGAGCAAGAGCAGTTCTGCAATGATCTGATTCCTCAGCATGGATGGCTTAACCCTGTCTCCTCCTGTCCTGAGGAGTGCCGCTGCGATAGAACATTTGTTTACTGTAATGAGCGAAGCCTGACATCTGTGCCTCTGGGGGTGCAAGAGGGTTATAAGACCCTCTTCCTCCACAACAATCAGATCAACAATGCCGGTTTTCCATTGGAGCTACACAATGTTGCCTCTGTAGATACTGTTTACCTATATGGAAATCAGCTGGATGAATTTCCCCTCAACCTTCCTAGGAACGTTCGAGTGCTGCACCTTCAGGAAAACAACATCCAGACTATATCAAGGGCAGCACTTGCCCAGCTACCCATGCTGGAGGAACTCCACCTGGATGACAACTCCATCTCAACTGTAGGGGTAGAGGAGGGGGCTTTCAGGGAGGCTGTCAGCCTCAAGCTTCTTTTCCTTACCAAAAACCACCTGAGCAGCATTCCTATCGGATTACCAGCAGATCTCAAGGAGCTGCGTTTGGATGAGAATCGCATTGCCGACATTGACGAGGATGCCTTCCAGAATGTCACCACCCTGCAGCGACTGTTGCTGGATGGGAACTTGCTCGAGGATGAGGACATCGCTCCAGGAACCTTCCAGGATCTGGTCAACCTCAAAGAACTGTCCCTAGCACGCAACTCCCTCACCACTCCACCACCGTTGCTACCTAGTGCATCCCTGACCAAGCTCAACCTGCAGGAAAACCAGATGAACACCATTGAAGTGAAATCCTTTGCTGGGCTTAGTAAACTGGAGAAGTTAGATATCTCCAGCAATCAGCTACAGTTTCTTCCATCGGGTGTCTTTGACGGCTTGAGAAACCTGAGGCACCTTAATGCGAGAAACAACCTCTGGCGTTGTGATTGCAGCATTAAGTGGGTCATTGCATGGCTCAGGTCTCTGCCGGCTGCGATAAATGTCCATCCCTTAAAAATCTCCTTTCATGTTGTTAATTCTACCTGCATTGTTGTGAGCTGGGAGTCTTACTTCACTGTGACGGCTTATAAGGTGACTTGGGTCAAGATGGGGCAGAGTTTGATGAGTGACATCCATCGAGAAAGAACAGTCCCAGGATACCAACGAAGACTTAGCCTGTCAAATTTGGAGCCCAACTCTATCTATCGCATCTGCGTGTACGTTCTGGATACTCTTAACACTTACAGACCGGGCGAGGATACTATCTGTTCTGAGGCTAAGACCAAATCCACATCCACGTACTCTGAATCCGAGCAAGCTGCCCAACAAGACAACACCTCAACACTCCTATTAGCTGGAGTGATAGGTGGGGCAGTGTTGGTGGTCTTAGTGACACTTCTAAGCGTGTTTTGCTGGCACATGCACAAGAAAAGCAGGTCGTCATCGTCCAAATGGAAATACAATCGCGGCAGGAGAAAAGATGACTACTGCGAGGCTGGCACCAAAAAGGATAACTCCATCCTGGAAATGACTGAAACAAGCTTTCAGATAGTGTCGCTAAACAATGAGCAGCTTTTAAAAGGGGACTTCAGAATTCAGCCCATCTACACACCTAATGGAGGAATTGGCCTCCGAGACTGTCACCTTAGTAACAATAGCATAGCTTATTGCAAGAGCAGTAACGTTCCCAGTGTGGACTTCTGCCACACATGATGCTTTTCAATGGATGCTACAACCATTTGTTCAAAGAAAATGTAGTTCA

Function

symbol description
flrt2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in brain; neurons; pronephros; and solid lens vesicle. Orthologous to human FLRT2 (fibronectin leucine rich transmembrane protein 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16362 FLRT; leucine-rich repeat transmembrane protein FLRT

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_04796878_04799272.mRNA True 1856 mRNA 0.49 3 4796878 4799321

Neighbor

gene id symbol gene type direction distance location
CI01000051_04763063_04778692 NA coding upstream 17796 4762496 ~ 4779082 (+)
CI01000051_04419475_04464134 NA coding upstream 332712 4419270 ~ 4464166 (+)
CI01000051_04374052_04393328 NA coding upstream 403201 4372658 ~ 4393677 (+)
CI01000051_04155754_04157992 NFKBIAA coding upstream 638549 4155684 ~ 4158329 (+)
CI01000051_04094412_04101387 CALM2, CALM3, CALM1 coding upstream 695362 4094354 ~ 4101516 (+)
CI01000051_05072860_05074568 GLRX5 coding downstream 273308 5072629 ~ 5074874 (+)
CI01000051_05126681_05142536 NA coding downstream 326430 5125751 ~ 5142617 (+)
CI01000051_05174862_05175926 NA coding downstream 374787 5174108 ~ 5176507 (+)
CI01000051_05254556_05270993 MEIS2B, MEIS2 coding downstream 455235 5254556 ~ 5271828 (+)
CI01000051_05296858_05301152 NA coding downstream 497363 5296684 ~ 5301334 (+)
G219662 NA non-coding upstream 244406 4551837 ~ 4552472 (+)
G219624 NA non-coding upstream 340876 4455699 ~ 4456002 (+)
G219620 NA non-coding upstream 347258 4449413 ~ 4449620 (+)
G219616 NA non-coding upstream 368899 4427675 ~ 4427979 (+)
G219615 NA non-coding upstream 374086 4422530 ~ 4422792 (+)
G219775 NA non-coding downstream 26944 4826265 ~ 4826468 (+)
G219798 NA non-coding downstream 93915 4893236 ~ 4894179 (+)
G219819 NA non-coding downstream 133022 4932343 ~ 4932850 (+)
G219835 NA non-coding downstream 185074 4984395 ~ 5046943 (+)
G219803 NA non-coding downstream 223852 4914974 ~ 5052033 (+)
G218981 NA other upstream 1550005 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 2730795 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4072174 637590 ~ 720669 (+)
G217075 NA other upstream 4412750 324465 ~ 384128 (+)
CI01000051_06825895_06830637 NA other downstream 2026478 6825895 ~ 6830637 (+)
G221319 NA other downstream 2542720 7342041 ~ 7342546 (+)
G221386 NA other downstream 2610202 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 3306322 8209722 ~ 8214696 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017937 NA non-coding NC_007131.7 CM002904.2 11097393 ~ 11178022 (-)