CI01000051_05254556_05270993 (MEIS2B, MEIS2)


Basic Information

Item Value
gene id CI01000051_05254556_05270993
gene name MEIS2B, MEIS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5254556 ~ 5271828 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000051_05254556_05270993.mRNA
CACAGCACATGTGAAACTGGAGCCCAGCGGCAGGTTTGCAGGACTTTCGCTGGATCTGAAGAACTAGGAGGAAAGTATCTTGCGGCTCAGGCAAACATCCTGACGGGTCAAGCAAAGTACGAAGACCTTGCCCACTATGGTGGCGGTATGGATGGAGTTGGGGTTCCGACGTCGATGTACGGGGACCCGCACGCGCCTCGGCCCCTGCCGCAGGTTCACCATTTGAATCACGGGCCACCGCCACATGCCAACCAACACTACGGGGCCCACGCACCGCACAGCATCATGCCCAGCAGCATGGGCTCGGCTGTCAACGACGCACTTAAAAGAGACAAGGACCAAATTTATGGGCACCCGTTATTTCCGCTGCTGGCGCTGGTGTTTGAGAAGTGCGAGCTGGCCACATGCACGCCGAGAGAGCCCGGAGTCGCTGGAGGAGATGTGTGCTCATCCGATTCATTTAACGAGGACATCGCTGTGTTTGCCAAACAGATTCGGGCAGAGAAGCCGTTATTTTCTTCTAATCCAGAGTTGGACAATTTGATGATTCAATCAATACAAGTATTACGATTCCATCTTTTAGAACTCGAAAAGGTGCACGAGCTTTGCGACAACTTTTGTCATCGATATATTAGCTGTTTGAAGGGCAAAATGCCCATTGACCTGGTAATTGATGAACGGGATGGTTGCAAATCCGACTTCGACGACCTCTCAGGATCCTCGACAAATCTCGCAGATCACAATCCAGCATCCTGGAGAGACATGGACGACGCTCACTCCACTCCCTCAGTCGGCACCCCAGGACCCTCCAGCGGGGGACATGCCTCTCAGAGCGGAGACAACAGCAGTGAACTAGATCATATCACGGCCACGGGGGACAAGAGGATAAGAGCATCTAATCAATATGCTTTAAGCGAAACGATTAGCGAGAACAAAATCATCTGCGTTCGTCCAGTAATTATCCAGTCTGTTGCGTCCAGTAGTCAGAATTATGGCCCCTTTGGAGAAATCCATTTAGAAGTTTTTGTATTAGTGAAAGTGAAAAAAGGCTGTAAATTGAAGCTACTAGCCTCTTCTCCATGTCTTAGGGTGCTGTTTTTCCCTAAACAGCCTGAGGGCTTACTCCAGCCTTCCTCCAGGCTGCTCTGGCCCCCCTCTGCGCTGCGCGTGCAGACTCTGGGGCCGGGGAGTGAGGTAGGGCTCAGGGAGCTGCAGAGAGCAGCAGCCTTTAAAGAGAGTGCAGTCACACAGGCTGCATGGGCCAAGTTGCCAGGGAACAGAGATGGCTTGGATAACAGCTTGGCATCTCCGGGAACAGGGGACGAGGACGACCAGGACAAGAAACGGCAGAAGAAGAGAGGAATCTTTCCCAAAGTGGCGACCAACATCATGCGGGCGTGGCTCTTCCAGCATCTTACGCACCCCTACCCATCTGAAGAGCAGAAGAAGCAGCTAGCACAGGACACAGGTCTCACCATCTTACAAGTGAATAACTGGTTTATCAATGCTCGAAGAAGAATCGTGCAGCCCATGATTGATCAGTCTAACAGAGCAGTAAGTCAAGGAACCGCTTACAGCCCCGATGGTCAGCCGATGGGCGGCTTTGTGCTAGACGGCCAGCAACACATGGGTCTTCGGCCTGGCGGTCCCATGGGAGGTATGGGTATGAACATGGGTATGGATGGACAGTGGCACTACATGTAAACGCCTCCCAGCTTCCCAAACCATAAACGTAAGGAAACGCTTTGGTACTTAGAACATCCCTGCTCTTTCTCCTTTCACTCGGCGTGCGAAATCTGATTATGGTGGCAATTCTCTCTCCGACGACCCCCCCCCCCTCGCACGCACGCACTCGCGCACCTTCCTTCCCCGGCTCCATCTTCGCTGCCTGTCTCTGACAGTCCACAAATCAAGACGTATCGCTCGCCGCGGGCGGCCTGGCATGGAGAATTTTATTTAATACCCACACTGTGCTGCCCAATGAGCCCCTCCATAATGACACTTACCTTGATTAATAGAGCTCTTTATATGTAAATAGGCACCGCATCCAGTTCTCCAATCGTGCCAACACAGCCCTTTCCTCTCAAATAACAACCTCAGCCTCTGCTAATGAAGGGAGAAGAGAGGGGAGGTGAGCGGAGGTTAACACCCCCCACCAAAGCCACAGACACATAGAGATATCATGAGCTCCGGCTTGCAGGAGCCAGAAACACGCAGACTAAATAATTTCCAGACTATTTAATCCTACCTTTTTTTTTATTGAATTATCATCGAGTCGTTACTGTAATTGCGTCATTTAGAGGAATGTTTCCCCATCCTTAATTTGCTCTGGTTAAACACCATATGCTGGTGGATCGTTGGGATCATTATGAAGATCTGTTTTCCTGCATAAAGCGGATTGAGACACATTTATGATCTTAGAGGCAGGTGTATGTTTATTTAAAAGAATATTCAGAGTTGGTACAAGTTAAGTTTCATTGAGAGCGTTTGTGGTGTAATGTTTATTACCACAACAACAAAAAAAAAGCAAGAATTTCAA

Function

symbol description
meis2b Predicted to enable DNA binding activity. Acts upstream of or within cardiac atrium morphogenesis and heart looping. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural keel; heart rudiment; nervous system; neural plate; and pericardial region. Human ortholog(s) of this gene implicated in cleft palate, cardiac defects, and intellectual disabillity. Orthologous to human MEIS2 (Meis homeobox 2).
meis2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of cardiac muscle myoblast proliferation; positive regulation of mitotic cell cycle; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus and perinuclear region of cytoplasm. Predicted to be part of chromatin. Implicated in cleft palate, cardiac defects, and intellectual disabillity.

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process

KEGG:

id description
K16670 MEIS2; homeobox protein Meis2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000051_05254556_05270993.mRNA True 2539 mRNA 0.50 14 5254556 5271828

Neighbor

gene id symbol gene type direction distance location
CI01000051_05174862_05175926 NA coding upstream 78049 5174108 ~ 5176507 (+)
CI01000051_05126681_05142536 NA coding upstream 111939 5125751 ~ 5142617 (+)
CI01000051_05072860_05074568 GLRX5 coding upstream 179682 5072629 ~ 5074874 (+)
CI01000051_04796878_04799272 FLRT2 coding upstream 455235 4796878 ~ 4799321 (+)
CI01000051_04763063_04778692 NA coding upstream 475474 4762496 ~ 4779082 (+)
CI01000051_05296858_05301152 NA coding downstream 24856 5296684 ~ 5301334 (+)
CI01000051_05314994_05317995 ACTC1B, ACTA2, ACTA1, MGC53823, ACTC1, MGC75582, ACT3, ACTC1A, ACTA1A, ACT2, ACTC1.L coding downstream 42616 5314444 ~ 5318185 (+)
CI01000051_05320361_05322570 GJD2B, GJD2 coding downstream 48533 5320361 ~ 5323905 (+)
CI01000051_05401881_05405868 NA coding downstream 130053 5401881 ~ 5405886 (+)
CI01000051_05454570_05480649 NA coding downstream 182704 5454532 ~ 5480935 (+)
G220730 NA non-coding upstream 48928 5205426 ~ 5205628 (+)
G220727 NA non-coding upstream 51805 5202409 ~ 5202751 (+)
G220726 NA non-coding upstream 54872 5199405 ~ 5199684 (+)
G220725 NA non-coding upstream 55559 5198774 ~ 5198997 (+)
G220701 NA non-coding upstream 76989 5177338 ~ 5177567 (+)
G220773 NA non-coding downstream 76979 5348807 ~ 5406672 (+)
G220807 NA non-coding downstream 103854 5375682 ~ 5376525 (+)
G220830 NA non-coding downstream 161116 5432944 ~ 5433210 (+)
G220844 NA non-coding downstream 211677 5483505 ~ 5484126 (+)
G220846 NA non-coding downstream 213650 5485478 ~ 5485721 (+)
G219803 NA other upstream 202523 4914974 ~ 5052033 (+)
CI01000051_04374052_04393328 NA other upstream 879226 4372658 ~ 4393677 (+)
G218981 NA other upstream 2007683 3245443 ~ 3246873 (+)
CI01000051_02060996_02061735 NA other upstream 3188473 2060534 ~ 2062355 (+)
CI01000051_00638200_00720543 CDC42BPB other upstream 4529852 637590 ~ 720669 (+)
CI01000051_06825895_06830637 NA other downstream 1553971 6825895 ~ 6830637 (+)
G221319 NA other downstream 2070213 7342041 ~ 7342546 (+)
G221386 NA other downstream 2137695 7401175 ~ 7413007 (+)
CI01000051_08211233_08214513 NA other downstream 2833815 8209722 ~ 8214696 (+)
G222727 NA other downstream 3071114 8342942 ~ 8343448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location